Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 GPI-205ENST00000586425 1799 ntTSL 5 BASIC19.12■□□□□ 0.65
HOXC9P31274 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC19.12■□□□□ 0.65
HOXC9P31274 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC19.12■□□□□ 0.65
HOXC9P31274 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 RPS23-204ENST00000507980 836 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC19.12■□□□□ 0.65
HOXC9P31274 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
HOXC9P31274 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 LINC00431-202ENST00000636375 159 ntBASIC19.12■□□□□ 0.65
HOXC9P31274 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
HOXC9P31274 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC19.12■□□□□ 0.65
HOXC9P31274 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HOXC9P31274 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
HOXC9P31274 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC19.11■□□□□ 0.65
HOXC9P31274 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
HOXC9P31274 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
HOXC9P31274 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HOXC9P31274 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC19.11■□□□□ 0.65
HOXC9P31274 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC19.11■□□□□ 0.65
HOXC9P31274 PPP1R2P4-201ENST00000424051 595 ntBASIC19.11■□□□□ 0.65
HOXC9P31274 AC098934.1-203ENST00000442868 1262 ntBASIC19.11■□□□□ 0.65
HOXC9P31274 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 SCARNA12-201ENST00000459155 270 ntBASIC19.11■□□□□ 0.65
HOXC9P31274 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
HOXC9P31274 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 MAX-218ENST00000557746 571 ntTSL 4 BASIC19.11■□□□□ 0.65
HOXC9P31274 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
HOXC9P31274 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HOXC9P31274 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC19.11■□□□□ 0.65
HOXC9P31274 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC19.11■□□□□ 0.65
HOXC9P31274 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
HOXC9P31274 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC19.11■□□□□ 0.65
HOXC9P31274 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC9P31274 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HOXC9P31274 CICP14-201ENST00000629111 2732 ntBASIC19.1■□□□□ 0.65
HOXC9P31274 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXC9P31274 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HOXC9P31274 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXC9P31274 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HOXC9P31274 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC19.1■□□□□ 0.65
HOXC9P31274 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXC9P31274 LINC00115-201ENST00000473798 1317 ntBASIC19.1■□□□□ 0.65
HOXC9P31274 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HOXC9P31274 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
HOXC9P31274 SAT1-201ENST00000379251 801 ntTSL 2 BASIC19.1■□□□□ 0.65
HOXC9P31274 SAT1-202ENST00000379253 909 ntTSL 2 BASIC19.1■□□□□ 0.65
HOXC9P31274 SAT1-203ENST00000379254 868 ntTSL 3 BASIC19.1■□□□□ 0.65
HOXC9P31274 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXC9P31274 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HOXC9P31274 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC19.1■□□□□ 0.65
HOXC9P31274 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
HOXC9P31274 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC19.1■□□□□ 0.65
HOXC9P31274 AC084752.1-201ENST00000509766 622 ntBASIC19.1■□□□□ 0.65
HOXC9P31274 AC005740.1-201ENST00000515639 522 ntBASIC19.1■□□□□ 0.65
HOXC9P31274 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC19.1■□□□□ 0.65
HOXC9P31274 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC19.1■□□□□ 0.65
HOXC9P31274 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC19.1■□□□□ 0.65
HOXC9P31274 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXC9P31274 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC19.1■□□□□ 0.65
HOXC9P31274 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HOXC9P31274 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
HOXC9P31274 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
HOXC9P31274 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HOXC9P31274 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXC9P31274 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
HOXC9P31274 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HOXC9P31274 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXC9P31274 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms