Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A3P12111 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
COL6A3P12111 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
COL6A3P12111 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
COL6A3P12111 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 HFE-205ENST00000352392 653 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 RPS15P5-201ENST00000449885 432 ntBASIC14.69□□□□□ -0.06
COL6A3P12111 RPL29P2-201ENST00000488409 460 ntBASIC14.69□□□□□ -0.06
COL6A3P12111 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 NKAPP1-203ENST00000554109 573 ntTSL 4 BASIC14.69□□□□□ -0.06
COL6A3P12111 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC14.68□□□□□ -0.06
COL6A3P12111 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC14.68□□□□□ -0.06
COL6A3P12111 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
COL6A3P12111 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC14.68□□□□□ -0.06
COL6A3P12111 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 ZSCAN21-201ENST00000292450 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 KIR2DL4-203ENST00000357494 1396 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC14.68□□□□□ -0.06
COL6A3P12111 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 SGCA-202ENST00000344627 1057 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 LCN12-202ENST00000371633 579 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 AC012066.1-201ENST00000439252 694 ntBASIC14.68□□□□□ -0.06
COL6A3P12111 VDAC1P11-201ENST00000458323 852 ntBASIC14.68□□□□□ -0.06
COL6A3P12111 RN7SKP155-201ENST00000516031 288 ntBASIC14.68□□□□□ -0.06
COL6A3P12111 ABCC6P1-202ENST00000565118 796 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC14.68□□□□□ -0.06
COL6A3P12111 AC009093.10-201ENST00000641956 1442 ntBASIC14.68□□□□□ -0.06
COL6A3P12111 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 RTP2-201ENST00000358241 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.68□□□□□ -0.06
COL6A3P12111 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.68□□□□□ -0.06
COL6A3P12111 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
COL6A3P12111 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 TUBB8P9-201ENST00000422534 1276 ntBASIC14.68□□□□□ -0.06
COL6A3P12111 TUBB8P10-201ENST00000430210 1279 ntBASIC14.68□□□□□ -0.06
COL6A3P12111 AC053503.4-201ENST00000431827 224 ntTSL 5 BASIC14.68□□□□□ -0.06
COL6A3P12111 AC007690.1-201ENST00000451924 468 ntBASIC14.68□□□□□ -0.06
COL6A3P12111 KRTAP2-2-202ENST00000542910 390 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
COL6A3P12111 DNM1P50-201ENST00000565767 508 ntBASIC14.68□□□□□ -0.06
COL6A3P12111 AL390726.3-201ENST00000567428 635 ntTSL 5 BASIC14.68□□□□□ -0.06
COL6A3P12111 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
COL6A3P12111 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A3P12111 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.67□□□□□ -0.06
COL6A3P12111 NKILA-202ENST00000614771 2598 ntBASIC14.67□□□□□ -0.06
COL6A3P12111 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.67□□□□□ -0.06
COL6A3P12111 SATB2-AS1-202ENST00000441234 468 ntTSL 3 BASIC14.67□□□□□ -0.06
COL6A3P12111 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC14.67□□□□□ -0.06
COL6A3P12111 EPM2A-214ENST00000638783 801 ntTSL 5 BASIC14.67□□□□□ -0.06
COL6A3P12111 EPM2A-229ENST00000640980 647 ntTSL 3 BASIC14.67□□□□□ -0.06
COL6A3P12111 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.67□□□□□ -0.06
COL6A3P12111 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.67□□□□□ -0.06
COL6A3P12111 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 AL391903.1-201ENST00000407513 365 ntBASIC14.67□□□□□ -0.06
COL6A3P12111 AC090587.1-201ENST00000415809 494 ntTSL 3 BASIC14.67□□□□□ -0.06
COL6A3P12111 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC14.67□□□□□ -0.06
COL6A3P12111 HNRNPA1P68-201ENST00000425806 979 ntBASIC14.67□□□□□ -0.06
COL6A3P12111 MLN-202ENST00000430124 566 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 RN7SL76P-201ENST00000482435 289 ntBASIC14.67□□□□□ -0.06
COL6A3P12111 AP001979.2-201ENST00000526254 975 ntTSL 5 BASIC14.67□□□□□ -0.06
COL6A3P12111 RBM7-208ENST00000545678 867 ntTSL 3 BASIC14.67□□□□□ -0.06
COL6A3P12111 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC14.67□□□□□ -0.06
COL6A3P12111 PDLIM2-218ENST00000614502 599 ntTSL 2 BASIC14.67□□□□□ -0.06
COL6A3P12111 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC14.67□□□□□ -0.06
COL6A3P12111 AL356583.1-201ENST00000398739 1371 ntBASIC14.67□□□□□ -0.06
COL6A3P12111 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.67□□□□□ -0.06
COL6A3P12111 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.67□□□□□ -0.06
COL6A3P12111 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A3P12111 IGLV2-33-201ENST00000390302 412 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
COL6A3P12111 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC14.67□□□□□ -0.06
COL6A3P12111 MT3-202ENST00000561640 514 ntTSL 3 BASIC14.67□□□□□ -0.06
COL6A3P12111 uc_338.24-201ENST00000617802 182 ntBASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms