Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 APOC3-202ENST00000375345 604 ntTSL 5 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 TISP43-201ENST00000409793 538 ntTSL 4 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 AC104306.2-201ENST00000451877 341 ntBASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 MIR6869-201ENST00000619434 62 ntBASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 TNN-203ENST00000622870 3719 ntTSL 5 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 AL023775.1-201ENST00000454907 1746 ntBASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 DUX4L45-201ENST00000566406 1057 ntBASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 BX640514.1-201ENST00000583223 1918 ntBASIC17.59■□□□□ 0.41
CHMP4CQ96CF2 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHMP4CQ96CF2 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHMP4CQ96CF2 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.58■□□□□ 0.41
CHMP4CQ96CF2 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.41
CHMP4CQ96CF2 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
CHMP4CQ96CF2 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHMP4CQ96CF2 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.41
CHMP4CQ96CF2 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
CHMP4CQ96CF2 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CHMP4CQ96CF2 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.58■□□□□ 0.41
CHMP4CQ96CF2 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHMP4CQ96CF2 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms