Protein–RNA interactions for Protein: Q08945

SSRP1, FACT complex subunit SSRP1, humanhuman

Known RBP Predictions only

Length 709 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1Q08945 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SSRP1Q08945 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC17.06■□□□□ 0.32
SSRP1Q08945 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SSRP1Q08945 AC012617.1-204ENST00000586340 2305 ntBASIC17.06■□□□□ 0.32
SSRP1Q08945 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSRP1Q08945 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSRP1Q08945 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSRP1Q08945 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.06■□□□□ 0.32
SSRP1Q08945 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.06■□□□□ 0.32
SSRP1Q08945 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSRP1Q08945 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSRP1Q08945 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.06■□□□□ 0.32
SSRP1Q08945 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSRP1Q08945 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.06■□□□□ 0.32
SSRP1Q08945 NCK2-206ENST00000522586 490 ntTSL 5 BASIC17.06■□□□□ 0.32
SSRP1Q08945 SORD2P-201ENST00000558556 1069 ntBASIC17.06■□□□□ 0.32
SSRP1Q08945 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SSRP1Q08945 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.06■□□□□ 0.32
SSRP1Q08945 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSRP1Q08945 AC017083.2-201ENST00000608069 979 ntBASIC17.06■□□□□ 0.32
SSRP1Q08945 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.06■□□□□ 0.32
SSRP1Q08945 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSRP1Q08945 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSRP1Q08945 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSRP1Q08945 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSRP1Q08945 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSRP1Q08945 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SSRP1Q08945 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SSRP1Q08945 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSRP1Q08945 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SSRP1Q08945 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC17.05■□□□□ 0.32
SSRP1Q08945 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SSRP1Q08945 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC17.05■□□□□ 0.32
SSRP1Q08945 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC17.05■□□□□ 0.32
SSRP1Q08945 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 MIR326-201ENST00000362220 95 ntBASIC17.05■□□□□ 0.32
SSRP1Q08945 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.05■□□□□ 0.32
SSRP1Q08945 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.05■□□□□ 0.32
SSRP1Q08945 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC17.05■□□□□ 0.32
SSRP1Q08945 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.05■□□□□ 0.32
SSRP1Q08945 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.05■□□□□ 0.32
SSRP1Q08945 AC119751.2-201ENST00000504529 210 ntBASIC17.05■□□□□ 0.32
SSRP1Q08945 AC100850.1-201ENST00000506768 649 ntBASIC17.05■□□□□ 0.32
SSRP1Q08945 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
SSRP1Q08945 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.05■□□□□ 0.32
SSRP1Q08945 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.05■□□□□ 0.32
SSRP1Q08945 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC17.05■□□□□ 0.32
SSRP1Q08945 COX11-210ENST00000639671 696 ntBASIC17.05■□□□□ 0.32
SSRP1Q08945 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC17.05■□□□□ 0.32
SSRP1Q08945 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.05■□□□□ 0.32
SSRP1Q08945 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.05■□□□□ 0.32
SSRP1Q08945 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SSRP1Q08945 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.05■□□□□ 0.32
SSRP1Q08945 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC17.05■□□□□ 0.32
SSRP1Q08945 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 USP4-203ENST00000415188 1454 ntTSL 3 BASIC17.05■□□□□ 0.32
SSRP1Q08945 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.05■□□□□ 0.32
SSRP1Q08945 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSRP1Q08945 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC17.05■□□□□ 0.32
SSRP1Q08945 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC17.05■□□□□ 0.32
SSRP1Q08945 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SSRP1Q08945 AC009093.10-201ENST00000641956 1442 ntBASIC17.04■□□□□ 0.32
SSRP1Q08945 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSRP1Q08945 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSRP1Q08945 AL023775.1-201ENST00000454907 1746 ntBASIC17.04■□□□□ 0.32
SSRP1Q08945 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSRP1Q08945 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSRP1Q08945 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSRP1Q08945 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC17.04■□□□□ 0.32
SSRP1Q08945 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC17.04■□□□□ 0.32
SSRP1Q08945 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.04■□□□□ 0.32
SSRP1Q08945 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.04■□□□□ 0.32
SSRP1Q08945 KRT223P-202ENST00000449164 1292 ntBASIC17.04■□□□□ 0.32
SSRP1Q08945 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSRP1Q08945 IGHV3-71-201ENST00000523324 359 ntBASIC17.04■□□□□ 0.32
SSRP1Q08945 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms