Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 AC007787.1-201ENST00000588095 1583 ntBASIC12.32□□□□□ -0.44
HOXA1P49639 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC12.32□□□□□ -0.44
HOXA1P49639 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
HOXA1P49639 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
HOXA1P49639 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC12.32□□□□□ -0.44
HOXA1P49639 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
HOXA1P49639 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
HOXA1P49639 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 SPDYE14P-201ENST00000442619 822 ntBASIC12.32□□□□□ -0.44
HOXA1P49639 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC12.32□□□□□ -0.44
HOXA1P49639 KRT18P43-201ENST00000469825 1281 ntBASIC12.32□□□□□ -0.44
HOXA1P49639 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC12.32□□□□□ -0.44
HOXA1P49639 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC12.32□□□□□ -0.44
HOXA1P49639 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC12.32□□□□□ -0.44
HOXA1P49639 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
HOXA1P49639 AC026150.2-201ENST00000564693 1156 ntBASIC12.32□□□□□ -0.44
HOXA1P49639 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC12.32□□□□□ -0.44
HOXA1P49639 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC12.32□□□□□ -0.44
HOXA1P49639 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC12.32□□□□□ -0.44
HOXA1P49639 AC025181.2-201ENST00000606994 802 ntBASIC12.32□□□□□ -0.44
HOXA1P49639 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HOXA1P49639 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC12.32□□□□□ -0.44
HOXA1P49639 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
HOXA1P49639 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HOXA1P49639 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC12.32□□□□□ -0.44
HOXA1P49639 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC12.32□□□□□ -0.44
HOXA1P49639 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC12.32□□□□□ -0.44
HOXA1P49639 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC12.32□□□□□ -0.44
HOXA1P49639 SF1-209ENST00000433274 2317 ntTSL 2 BASIC12.32□□□□□ -0.44
HOXA1P49639 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HOXA1P49639 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC12.31□□□□□ -0.44
HOXA1P49639 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
HOXA1P49639 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 AL022323.5-201ENST00000624101 2059 ntBASIC12.31□□□□□ -0.44
HOXA1P49639 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 DAXX-202ENST00000374542 2613 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC12.31□□□□□ -0.44
HOXA1P49639 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 ELP4-203ENST00000395934 1961 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HOXA1P49639 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
HOXA1P49639 DIDO1-204ENST00000370368 2704 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HOXA1P49639 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HOXA1P49639 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 AC004461.1-201ENST00000412461 403 ntBASIC12.31□□□□□ -0.44
HOXA1P49639 AC074338.1-201ENST00000416825 156 ntBASIC12.31□□□□□ -0.44
HOXA1P49639 SPDYE7P-202ENST00000420373 878 ntBASIC12.31□□□□□ -0.44
HOXA1P49639 AC015922.1-201ENST00000421102 1152 ntBASIC12.31□□□□□ -0.44
HOXA1P49639 PGAM5P1-201ENST00000518923 814 ntBASIC12.31□□□□□ -0.44
HOXA1P49639 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC12.31□□□□□ -0.44
HOXA1P49639 MIR4453-201ENST00000584019 89 ntBASIC12.31□□□□□ -0.44
HOXA1P49639 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
HOXA1P49639 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC12.31□□□□□ -0.44
HOXA1P49639 AC004835.2-201ENST00000603762 682 ntBASIC12.31□□□□□ -0.44
HOXA1P49639 LINC00628-201ENST00000628516 1289 ntBASIC12.31□□□□□ -0.44
HOXA1P49639 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC12.31□□□□□ -0.44
HOXA1P49639 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.31□□□□□ -0.44
HOXA1P49639 TP53TG5-201ENST00000372726 2374 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
HOXA1P49639 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 HSPA2-201ENST00000247207 2767 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
HOXA1P49639 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC12.31□□□□□ -0.44
HOXA1P49639 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 CCDC144NL-201ENST00000327925 2806 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 AL358933.1-201ENST00000565046 2830 ntBASIC12.31□□□□□ -0.44
HOXA1P49639 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms