Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 ACTG1P3-201ENST00000431775 1114 ntBASIC14.42□□□□□ -0.1
PCNAP12004 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 AC012441.1-201ENST00000446669 685 ntBASIC14.42□□□□□ -0.1
PCNAP12004 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.42□□□□□ -0.1
PCNAP12004 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.42□□□□□ -0.1
PCNAP12004 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.42□□□□□ -0.1
PCNAP12004 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 AC145423.3-201ENST00000615987 467 ntBASIC14.42□□□□□ -0.1
PCNAP12004 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.42□□□□□ -0.1
PCNAP12004 AC025048.6-201ENST00000634326 1161 ntBASIC14.42□□□□□ -0.1
PCNAP12004 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.42□□□□□ -0.1
PCNAP12004 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.42□□□□□ -0.1
PCNAP12004 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.42□□□□□ -0.1
PCNAP12004 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.42□□□□□ -0.1
PCNAP12004 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.42□□□□□ -0.1
PCNAP12004 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PCNAP12004 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
PCNAP12004 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
PCNAP12004 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
PCNAP12004 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.41□□□□□ -0.1
PCNAP12004 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.41□□□□□ -0.1
PCNAP12004 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PCNAP12004 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.41□□□□□ -0.1
PCNAP12004 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PCNAP12004 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.41□□□□□ -0.1
PCNAP12004 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.41□□□□□ -0.1
PCNAP12004 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.41□□□□□ -0.1
PCNAP12004 RN7SL837P-201ENST00000463010 287 ntBASIC14.41□□□□□ -0.1
PCNAP12004 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.41□□□□□ -0.1
PCNAP12004 RN7SL692P-201ENST00000464677 288 ntBASIC14.41□□□□□ -0.1
PCNAP12004 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.41□□□□□ -0.1
PCNAP12004 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
PCNAP12004 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
PCNAP12004 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.41□□□□□ -0.1
PCNAP12004 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.41□□□□□ -0.1
PCNAP12004 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.41□□□□□ -0.1
PCNAP12004 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.41□□□□□ -0.1
PCNAP12004 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
PCNAP12004 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PCNAP12004 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.41□□□□□ -0.1
PCNAP12004 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.41□□□□□ -0.1
PCNAP12004 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
PCNAP12004 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PCNAP12004 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
PCNAP12004 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC14.41□□□□□ -0.1
PCNAP12004 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PCNAP12004 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.41□□□□□ -0.1
PCNAP12004 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
PCNAP12004 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PCNAP12004 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCNAP12004 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCNAP12004 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCNAP12004 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCNAP12004 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
PCNAP12004 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCNAP12004 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCNAP12004 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCNAP12004 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCNAP12004 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.4□□□□□ -0.1
PCNAP12004 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCNAP12004 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCNAP12004 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCNAP12004 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms