Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC8.81□□□□□ -1
APOBP04114 AP000439.2-201ENST00000542064 726 ntTSL 2 BASIC8.81□□□□□ -1
APOBP04114 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC8.81□□□□□ -1
APOBP04114 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC8.81□□□□□ -1
APOBP04114 RN7SL440P-201ENST00000577855 343 ntBASIC8.81□□□□□ -1
APOBP04114 RN7SL478P-201ENST00000584358 298 ntBASIC8.81□□□□□ -1
APOBP04114 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC8.81□□□□□ -1
APOBP04114 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC8.81□□□□□ -1
APOBP04114 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
APOBP04114 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC8.81□□□□□ -1
APOBP04114 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC8.81□□□□□ -1
APOBP04114 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC8.81□□□□□ -1
APOBP04114 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC8.81□□□□□ -1
APOBP04114 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC8.81□□□□□ -1
APOBP04114 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
APOBP04114 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC8.81□□□□□ -1
APOBP04114 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC8.8□□□□□ -1
APOBP04114 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC8.8□□□□□ -1
APOBP04114 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC8.8□□□□□ -1
APOBP04114 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC8.8□□□□□ -1
APOBP04114 LINC00115-201ENST00000473798 1317 ntBASIC8.8□□□□□ -1
APOBP04114 U3.5-201ENST00000363448 216 ntBASIC8.8□□□□□ -1
APOBP04114 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC8.8□□□□□ -1
APOBP04114 RNASEH2CP1-201ENST00000454281 502 ntBASIC8.8□□□□□ -1
APOBP04114 AC007679.1-201ENST00000458609 502 ntBASIC8.8□□□□□ -1
APOBP04114 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC8.8□□□□□ -1
APOBP04114 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC8.8□□□□□ -1
APOBP04114 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC8.8□□□□□ -1
APOBP04114 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC8.8□□□□□ -1
APOBP04114 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC8.8□□□□□ -1
APOBP04114 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC8.8□□□□□ -1
APOBP04114 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC8.8□□□□□ -1
APOBP04114 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC8.8□□□□□ -1
APOBP04114 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC8.8□□□□□ -1
APOBP04114 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC8.8□□□□□ -1
APOBP04114 THAP4-203ENST00000402545 833 ntTSL 5 BASIC8.8□□□□□ -1
APOBP04114 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC8.8□□□□□ -1
APOBP04114 HNRNPA3P6-201ENST00000472163 1006 ntBASIC8.8□□□□□ -1
APOBP04114 AC026412.1-206ENST00000502273 206 ntBASIC8.8□□□□□ -1
APOBP04114 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC8.8□□□□□ -1
APOBP04114 SRPK2P-201ENST00000523408 1100 ntBASIC8.8□□□□□ -1
APOBP04114 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC8.8□□□□□ -1
APOBP04114 MST1L-204ENST00000545160 559 ntTSL 4 BASIC8.8□□□□□ -1
APOBP04114 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC8.8□□□□□ -1
APOBP04114 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC8.8□□□□□ -1
APOBP04114 ZEB1-AS1-208ENST00000607166 2503 ntBASIC8.8□□□□□ -1
APOBP04114 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
APOBP04114 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC8.8□□□□□ -1
APOBP04114 RPL13AP3-202ENST00000494676 1473 ntBASIC8.8□□□□□ -1
APOBP04114 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC8.8□□□□□ -1
APOBP04114 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC8.8□□□□□ -1
APOBP04114 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC8.8□□□□□ -1
APOBP04114 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC8.8□□□□□ -1
APOBP04114 IGFL1-201ENST00000437936 769 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 PEBP1P3-201ENST00000455475 548 ntBASIC8.8□□□□□ -1
APOBP04114 SNRPD2P2-201ENST00000473818 333 ntBASIC8.8□□□□□ -1
APOBP04114 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC8.8□□□□□ -1
APOBP04114 PRR20FP-201ENST00000603320 180 ntBASIC8.8□□□□□ -1
APOBP04114 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC8.8□□□□□ -1
APOBP04114 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC8.8□□□□□ -1
APOBP04114 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC8.8□□□□□ -1
APOBP04114 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC8.8□□□□□ -1
APOBP04114 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 PES1P2-201ENST00000449745 1735 ntBASIC8.8□□□□□ -1
APOBP04114 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC8.8□□□□□ -1
APOBP04114 MED15P3-201ENST00000413613 326 ntBASIC8.8□□□□□ -1
APOBP04114 AC005722.1-201ENST00000431878 964 ntBASIC8.8□□□□□ -1
APOBP04114 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC8.8□□□□□ -1
APOBP04114 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC8.8□□□□□ -1
APOBP04114 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC8.8□□□□□ -1
APOBP04114 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC8.8□□□□□ -1
APOBP04114 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC8.8□□□□□ -1
APOBP04114 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC8.8□□□□□ -1
APOBP04114 AC015912.3-201ENST00000619432 348 ntBASIC8.8□□□□□ -1
APOBP04114 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
APOBP04114 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC8.8□□□□□ -1
APOBP04114 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC8.79□□□□□ -1
APOBP04114 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms