Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 RPL18-209ENST00000550645 463 ntTSL 5 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 RPL18-214ENST00000552588 559 ntTSL 3 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AC034105.1-201ENST00000563488 319 ntBASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AC145285.3-201ENST00000564603 959 ntBASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 CD7-202ENST00000578509 925 ntTSL 3 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AC015910.1-201ENST00000579400 975 ntBASIC11.13□□□□□ -0.63
HLA-DQA1P01909 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 ATP11A-201ENST00000375630 8768 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AC215219.1-201ENST00000400706 1817 ntBASIC11.13□□□□□ -0.63
HLA-DQA1P01909 NARF-206ENST00000457415 1668 ntTSL 5 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 TTC39A-202ENST00000262676 6287 ntTSL 2 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AC073957.3-201ENST00000609998 6758 ntBASIC11.13□□□□□ -0.63
HLA-DQA1P01909 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DQA1P01909 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AL445209.1-201ENST00000607269 3491 ntBASIC11.12□□□□□ -0.63
HLA-DQA1P01909 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 GOLGA8IP-202ENST00000611635 2100 ntBASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AC011481.3-201ENST00000623895 5594 ntBASIC11.12□□□□□ -0.63
HLA-DQA1P01909 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 HPSE-201ENST00000311412 4615 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 COL3A1-201ENST00000304636 5543 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 ZNF646-202ENST00000394979 8118 ntAPPRIS ALT2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AL591424.1-201ENST00000442569 1213 ntBASIC11.12□□□□□ -0.63
HLA-DQA1P01909 FXR1-221ENST00000491674 365 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 SMN2-210ENST00000511812 867 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 RNA5SP410-201ENST00000516285 106 ntBASIC11.12□□□□□ -0.63
HLA-DQA1P01909 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AC096734.2-201ENST00000562054 433 ntBASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AC140113.2-201ENST00000604370 208 ntBASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AC027601.4-201ENST00000611259 610 ntBASIC11.12□□□□□ -0.63
HLA-DQA1P01909 MIR6074-201ENST00000612054 107 ntBASIC11.12□□□□□ -0.63
HLA-DQA1P01909 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 Z98257.2-202ENST00000641138 1548 ntBASIC11.12□□□□□ -0.63
HLA-DQA1P01909 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AC011498.7-201ENST00000624986 2027 ntBASIC11.12□□□□□ -0.63
HLA-DQA1P01909 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 SULF1-202ENST00000402687 4891 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms