Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 AL133338.1-201ENST00000565695 1517 ntBASIC15.54■□□□□ 0.08
RTN3O95197 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
RTN3O95197 AC138028.6-201ENST00000616106 1482 ntBASIC15.54■□□□□ 0.08
RTN3O95197 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.54■□□□□ 0.08
RTN3O95197 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
RTN3O95197 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
RTN3O95197 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 AL136172.1-201ENST00000598590 1394 ntBASIC15.54■□□□□ 0.08
RTN3O95197 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC15.54■□□□□ 0.08
RTN3O95197 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 AC012441.2-201ENST00000444843 739 ntBASIC15.54■□□□□ 0.08
RTN3O95197 CICP12-201ENST00000455801 843 ntBASIC15.54■□□□□ 0.08
RTN3O95197 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC15.54■□□□□ 0.08
RTN3O95197 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.54■□□□□ 0.08
RTN3O95197 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15.54■□□□□ 0.08
RTN3O95197 AC106794.1-201ENST00000506935 792 ntBASIC15.54■□□□□ 0.08
RTN3O95197 SCARNA20.5-201ENST00000516991 142 ntBASIC15.54■□□□□ 0.08
RTN3O95197 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.54■□□□□ 0.08
RTN3O95197 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC15.54■□□□□ 0.08
RTN3O95197 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC15.54■□□□□ 0.08
RTN3O95197 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.54■□□□□ 0.08
RTN3O95197 BNIP3P13-201ENST00000599968 566 ntBASIC15.54■□□□□ 0.08
RTN3O95197 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC15.54■□□□□ 0.08
RTN3O95197 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.54■□□□□ 0.08
RTN3O95197 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC15.54■□□□□ 0.08
RTN3O95197 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.54■□□□□ 0.08
RTN3O95197 AC022748.3-201ENST00000621828 275 ntBASIC15.54■□□□□ 0.08
RTN3O95197 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.54■□□□□ 0.08
RTN3O95197 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 HAL-202ENST00000538703 2637 ntTSL 2 BASIC15.54■□□□□ 0.08
RTN3O95197 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
RTN3O95197 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.54■□□□□ 0.08
RTN3O95197 AC092135.3-201ENST00000624151 1846 ntBASIC15.54■□□□□ 0.08
RTN3O95197 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC15.54■□□□□ 0.08
RTN3O95197 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.54■□□□□ 0.08
RTN3O95197 DGCR9-201ENST00000609630 2415 ntBASIC15.54■□□□□ 0.08
RTN3O95197 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.54■□□□□ 0.08
RTN3O95197 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
RTN3O95197 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RTN3O95197 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
RTN3O95197 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
RTN3O95197 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
RTN3O95197 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.53■□□□□ 0.08
RTN3O95197 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.53■□□□□ 0.08
RTN3O95197 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
RTN3O95197 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 RNMTL1P1-201ENST00000454103 560 ntBASIC15.53■□□□□ 0.08
RTN3O95197 AKR7A2P1-201ENST00000460134 915 ntBASIC15.53■□□□□ 0.08
RTN3O95197 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC15.53■□□□□ 0.08
RTN3O95197 AC005740.2-201ENST00000511085 419 ntBASIC15.53■□□□□ 0.08
RTN3O95197 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.53■□□□□ 0.08
RTN3O95197 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
RTN3O95197 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC15.53■□□□□ 0.08
RTN3O95197 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC15.53■□□□□ 0.08
RTN3O95197 AC005324.6-201ENST00000587972 613 ntBASIC15.53■□□□□ 0.08
RTN3O95197 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
RTN3O95197 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.53■□□□□ 0.08
RTN3O95197 AC117489.1-201ENST00000625169 3217 ntBASIC15.53■□□□□ 0.08
RTN3O95197 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.53■□□□□ 0.08
RTN3O95197 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.53■□□□□ 0.08
RTN3O95197 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC15.53■□□□□ 0.08
RTN3O95197 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC15.53■□□□□ 0.08
RTN3O95197 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.53■□□□□ 0.08
RTN3O95197 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.53■□□□□ 0.08
RTN3O95197 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.53■□□□□ 0.08
RTN3O95197 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
RTN3O95197 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
RTN3O95197 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.53■□□□□ 0.08
RTN3O95197 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.53■□□□□ 0.08
RTN3O95197 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms