Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CTDP1Q9Y5B0 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CTDP1Q9Y5B0 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
CTDP1Q9Y5B0 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
CTDP1Q9Y5B0 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.34■■□□□ 1.81
CTDP1Q9Y5B0 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CTDP1Q9Y5B0 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC26.34■■□□□ 1.81
CTDP1Q9Y5B0 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CTDP1Q9Y5B0 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC26.34■■□□□ 1.81
CTDP1Q9Y5B0 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC26.34■■□□□ 1.81
CTDP1Q9Y5B0 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CTDP1Q9Y5B0 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CTDP1Q9Y5B0 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CTDP1Q9Y5B0 GUK1-205ENST00000366722 850 ntTSL 3 BASIC26.33■■□□□ 1.81
CTDP1Q9Y5B0 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC26.33■■□□□ 1.81
CTDP1Q9Y5B0 GRAMD4P4-201ENST00000613563 1115 ntBASIC26.33■■□□□ 1.81
CTDP1Q9Y5B0 CD37-213ENST00000598095 1598 ntTSL 2 BASIC26.33■■□□□ 1.8
CTDP1Q9Y5B0 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
CTDP1Q9Y5B0 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.32■■□□□ 1.8
CTDP1Q9Y5B0 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CTDP1Q9Y5B0 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
CTDP1Q9Y5B0 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
CTDP1Q9Y5B0 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
CTDP1Q9Y5B0 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC26.32■■□□□ 1.8
CTDP1Q9Y5B0 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC26.31■■□□□ 1.8
CTDP1Q9Y5B0 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
CTDP1Q9Y5B0 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC26.31■■□□□ 1.8
CTDP1Q9Y5B0 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTDP1Q9Y5B0 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTDP1Q9Y5B0 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTDP1Q9Y5B0 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTDP1Q9Y5B0 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTDP1Q9Y5B0 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CTDP1Q9Y5B0 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CTDP1Q9Y5B0 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CTDP1Q9Y5B0 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CTDP1Q9Y5B0 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CTDP1Q9Y5B0 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CTDP1Q9Y5B0 SUDS3P1-201ENST00000505831 966 ntBASIC26.3■■□□□ 1.8
CTDP1Q9Y5B0 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC26.3■■□□□ 1.8
CTDP1Q9Y5B0 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
CTDP1Q9Y5B0 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTDP1Q9Y5B0 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CTDP1Q9Y5B0 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTDP1Q9Y5B0 AC022211.4-201ENST00000625094 2161 ntBASIC26.29■■□□□ 1.8
CTDP1Q9Y5B0 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC26.29■■□□□ 1.8
CTDP1Q9Y5B0 HYI-206ENST00000372434 1025 ntTSL 5 BASIC26.29■■□□□ 1.8
CTDP1Q9Y5B0 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
CTDP1Q9Y5B0 AL031432.3-201ENST00000607698 485 ntBASIC26.29■■□□□ 1.8
CTDP1Q9Y5B0 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.29■■□□□ 1.8
CTDP1Q9Y5B0 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CTDP1Q9Y5B0 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 SERBP1P1-201ENST00000396021 1160 ntBASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 PTMA-205ENST00000410064 814 ntTSL 2 BASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 PTCHD3P2-201ENST00000424937 1205 ntBASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 AC241377.3-202ENST00000626088 1088 ntBASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 AC241585.3-202ENST00000628937 1088 ntBASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 AC245100.8-202ENST00000629247 1058 ntBASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 AP003733.4-201ENST00000623785 1697 ntBASIC26.28■■□□□ 1.8
CTDP1Q9Y5B0 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.27■■□□□ 1.8
CTDP1Q9Y5B0 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC26.27■■□□□ 1.8
CTDP1Q9Y5B0 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
CTDP1Q9Y5B0 AF213884.3-201ENST00000563833 479 ntBASIC26.27■■□□□ 1.8
CTDP1Q9Y5B0 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
CTDP1Q9Y5B0 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
CTDP1Q9Y5B0 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CTDP1Q9Y5B0 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CTDP1Q9Y5B0 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
CTDP1Q9Y5B0 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC26.27■■□□□ 1.8
CTDP1Q9Y5B0 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 C17orf82-201ENST00000623772 1530 ntBASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 ZNRF2P3-201ENST00000424200 374 ntBASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 MIR4767-201ENST00000582827 78 ntBASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTDP1Q9Y5B0 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CTDP1Q9Y5B0 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
CTDP1Q9Y5B0 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CTDP1Q9Y5B0 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC26.25■■□□□ 1.79
CTDP1Q9Y5B0 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
CTDP1Q9Y5B0 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms