Protein–RNA interactions for Protein: Q9Y548

YIPF1, Protein YIPF1, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF1Q9Y548 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
YIPF1Q9Y548 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
YIPF1Q9Y548 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 MIR4767-201ENST00000582827 78 ntBASIC23.98■■□□□ 1.43
YIPF1Q9Y548 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
YIPF1Q9Y548 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC23.97■■□□□ 1.43
YIPF1Q9Y548 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
YIPF1Q9Y548 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
YIPF1Q9Y548 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.97■■□□□ 1.43
YIPF1Q9Y548 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
YIPF1Q9Y548 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.97■■□□□ 1.43
YIPF1Q9Y548 AP001330.3-201ENST00000520123 633 ntBASIC23.97■■□□□ 1.43
YIPF1Q9Y548 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
YIPF1Q9Y548 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
YIPF1Q9Y548 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
YIPF1Q9Y548 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
YIPF1Q9Y548 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
YIPF1Q9Y548 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
YIPF1Q9Y548 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
YIPF1Q9Y548 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
YIPF1Q9Y548 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
YIPF1Q9Y548 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.96■■□□□ 1.43
YIPF1Q9Y548 ALDH1A3-203ENST00000557963 1670 ntBASIC23.95■■□□□ 1.43
YIPF1Q9Y548 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.95■■□□□ 1.43
YIPF1Q9Y548 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.43
YIPF1Q9Y548 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.95■■□□□ 1.43
YIPF1Q9Y548 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
YIPF1Q9Y548 MIR939-201ENST00000401314 82 ntBASIC23.95■■□□□ 1.42
YIPF1Q9Y548 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
YIPF1Q9Y548 AL136967.2-201ENST00000623968 743 ntBASIC23.95■■□□□ 1.42
YIPF1Q9Y548 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
YIPF1Q9Y548 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
YIPF1Q9Y548 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
YIPF1Q9Y548 AP003733.4-201ENST00000623785 1697 ntBASIC23.95■■□□□ 1.42
YIPF1Q9Y548 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
YIPF1Q9Y548 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.94■■□□□ 1.42
YIPF1Q9Y548 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
YIPF1Q9Y548 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC23.94■■□□□ 1.42
YIPF1Q9Y548 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC23.94■■□□□ 1.42
YIPF1Q9Y548 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC23.94■■□□□ 1.42
YIPF1Q9Y548 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
YIPF1Q9Y548 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
YIPF1Q9Y548 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
YIPF1Q9Y548 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
YIPF1Q9Y548 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.94■■□□□ 1.42
YIPF1Q9Y548 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
YIPF1Q9Y548 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
YIPF1Q9Y548 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
YIPF1Q9Y548 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
YIPF1Q9Y548 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
YIPF1Q9Y548 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.93■■□□□ 1.42
YIPF1Q9Y548 AC006455.2-201ENST00000429931 906 ntBASIC23.93■■□□□ 1.42
YIPF1Q9Y548 AL138724.1-201ENST00000606771 1088 ntBASIC23.93■■□□□ 1.42
YIPF1Q9Y548 AC011298.3-201ENST00000615796 283 ntBASIC23.93■■□□□ 1.42
YIPF1Q9Y548 AC241377.3-202ENST00000626088 1088 ntBASIC23.93■■□□□ 1.42
YIPF1Q9Y548 AC241585.3-202ENST00000628937 1088 ntBASIC23.93■■□□□ 1.42
YIPF1Q9Y548 AC245100.8-202ENST00000629247 1058 ntBASIC23.93■■□□□ 1.42
YIPF1Q9Y548 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
YIPF1Q9Y548 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
YIPF1Q9Y548 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
YIPF1Q9Y548 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
YIPF1Q9Y548 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
YIPF1Q9Y548 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
YIPF1Q9Y548 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.92■■□□□ 1.42
YIPF1Q9Y548 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC23.92■■□□□ 1.42
YIPF1Q9Y548 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
YIPF1Q9Y548 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.92■■□□□ 1.42
YIPF1Q9Y548 AC105265.2-201ENST00000467189 838 ntBASIC23.92■■□□□ 1.42
YIPF1Q9Y548 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
YIPF1Q9Y548 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
YIPF1Q9Y548 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
YIPF1Q9Y548 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.91■■□□□ 1.42
YIPF1Q9Y548 NKILA-201ENST00000613231 537 ntTSL 4 BASIC23.91■■□□□ 1.42
YIPF1Q9Y548 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
YIPF1Q9Y548 AC135731.1-201ENST00000569415 2548 ntBASIC23.9■■□□□ 1.42
YIPF1Q9Y548 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
YIPF1Q9Y548 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
YIPF1Q9Y548 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.9■■□□□ 1.42
YIPF1Q9Y548 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC23.9■■□□□ 1.42
YIPF1Q9Y548 AC091305.1-201ENST00000479476 895 ntBASIC23.9■■□□□ 1.42
YIPF1Q9Y548 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC23.9■■□□□ 1.42
YIPF1Q9Y548 AC009086.3-201ENST00000623486 1008 ntBASIC23.9■■□□□ 1.42
YIPF1Q9Y548 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.9■■□□□ 1.42
YIPF1Q9Y548 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
YIPF1Q9Y548 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
YIPF1Q9Y548 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.9■■□□□ 1.42
YIPF1Q9Y548 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
YIPF1Q9Y548 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms