Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
ZC3H4Q9UPT8 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC27.91■■■□□ 2.06
ZC3H4Q9UPT8 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC27.91■■■□□ 2.06
ZC3H4Q9UPT8 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
ZC3H4Q9UPT8 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC27.91■■■□□ 2.06
ZC3H4Q9UPT8 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC27.91■■■□□ 2.06
ZC3H4Q9UPT8 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC27.91■■■□□ 2.06
ZC3H4Q9UPT8 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC27.91■■■□□ 2.06
ZC3H4Q9UPT8 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC27.9■■■□□ 2.06
ZC3H4Q9UPT8 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC27.9■■■□□ 2.06
ZC3H4Q9UPT8 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC27.9■■■□□ 2.06
ZC3H4Q9UPT8 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC27.9■■■□□ 2.06
ZC3H4Q9UPT8 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
ZC3H4Q9UPT8 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC27.9■■■□□ 2.06
ZC3H4Q9UPT8 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC27.9■■■□□ 2.06
ZC3H4Q9UPT8 STK32C-205ENST00000456004 607 ntTSL 2 BASIC27.9■■■□□ 2.06
ZC3H4Q9UPT8 IGHV3-19-201ENST00000521488 291 ntBASIC27.9■■■□□ 2.06
ZC3H4Q9UPT8 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC27.9■■■□□ 2.06
ZC3H4Q9UPT8 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC27.9■■■□□ 2.06
ZC3H4Q9UPT8 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC27.9■■■□□ 2.06
ZC3H4Q9UPT8 RAP2CP1-201ENST00000605103 478 ntBASIC27.9■■■□□ 2.06
ZC3H4Q9UPT8 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
ZC3H4Q9UPT8 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
ZC3H4Q9UPT8 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC27.89■■■□□ 2.05
ZC3H4Q9UPT8 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC27.89■■■□□ 2.05
ZC3H4Q9UPT8 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC27.89■■■□□ 2.05
ZC3H4Q9UPT8 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
ZC3H4Q9UPT8 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC27.88■■■□□ 2.05
ZC3H4Q9UPT8 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC27.88■■■□□ 2.05
ZC3H4Q9UPT8 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
ZC3H4Q9UPT8 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
ZC3H4Q9UPT8 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
ZC3H4Q9UPT8 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC27.87■■■□□ 2.05
ZC3H4Q9UPT8 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC27.87■■■□□ 2.05
ZC3H4Q9UPT8 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC27.87■■■□□ 2.05
ZC3H4Q9UPT8 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC27.87■■■□□ 2.05
ZC3H4Q9UPT8 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
ZC3H4Q9UPT8 AC080038.1-201ENST00000611274 1154 ntBASIC27.87■■■□□ 2.05
ZC3H4Q9UPT8 MIR6084-201ENST00000622012 110 ntBASIC27.87■■■□□ 2.05
ZC3H4Q9UPT8 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
ZC3H4Q9UPT8 AC131274.2-201ENST00000580697 1507 ntBASIC27.86■■■□□ 2.05
ZC3H4Q9UPT8 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
ZC3H4Q9UPT8 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC27.86■■■□□ 2.05
ZC3H4Q9UPT8 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
ZC3H4Q9UPT8 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
ZC3H4Q9UPT8 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC27.86■■■□□ 2.05
ZC3H4Q9UPT8 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC27.86■■■□□ 2.05
ZC3H4Q9UPT8 LINC02228-203ENST00000641970 1355 ntBASIC27.86■■■□□ 2.05
ZC3H4Q9UPT8 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC27.86■■■□□ 2.05
ZC3H4Q9UPT8 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC27.85■■■□□ 2.05
ZC3H4Q9UPT8 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC27.85■■■□□ 2.05
ZC3H4Q9UPT8 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC27.85■■■□□ 2.05
ZC3H4Q9UPT8 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC27.85■■■□□ 2.05
ZC3H4Q9UPT8 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC27.85■■■□□ 2.05
ZC3H4Q9UPT8 TMEM191A-211ENST00000637163 1067 ntBASIC27.85■■■□□ 2.05
ZC3H4Q9UPT8 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.84■■■□□ 2.05
ZC3H4Q9UPT8 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
ZC3H4Q9UPT8 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
ZC3H4Q9UPT8 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC27.84■■■□□ 2.05
ZC3H4Q9UPT8 AC006015.1-201ENST00000429970 570 ntBASIC27.84■■■□□ 2.05
ZC3H4Q9UPT8 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC27.84■■■□□ 2.05
ZC3H4Q9UPT8 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC27.84■■■□□ 2.05
ZC3H4Q9UPT8 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC27.84■■■□□ 2.05
ZC3H4Q9UPT8 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
ZC3H4Q9UPT8 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC27.84■■■□□ 2.05
ZC3H4Q9UPT8 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC27.84■■■□□ 2.05
ZC3H4Q9UPT8 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
ZC3H4Q9UPT8 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC27.83■■■□□ 2.05
ZC3H4Q9UPT8 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC27.83■■■□□ 2.05
ZC3H4Q9UPT8 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC27.83■■■□□ 2.05
ZC3H4Q9UPT8 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC27.83■■■□□ 2.05
ZC3H4Q9UPT8 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC27.83■■■□□ 2.05
ZC3H4Q9UPT8 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC27.83■■■□□ 2.05
ZC3H4Q9UPT8 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
ZC3H4Q9UPT8 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC27.82■■■□□ 2.04
ZC3H4Q9UPT8 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
ZC3H4Q9UPT8 GXYLT1P5-201ENST00000614548 1189 ntBASIC27.82■■■□□ 2.04
ZC3H4Q9UPT8 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC27.82■■■□□ 2.04
ZC3H4Q9UPT8 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC27.82■■■□□ 2.04
ZC3H4Q9UPT8 VGF-203ENST00000611537 1622 ntTSL 5 BASIC27.81■■■□□ 2.04
ZC3H4Q9UPT8 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
ZC3H4Q9UPT8 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
ZC3H4Q9UPT8 GAS2L1P2-201ENST00000436355 1356 ntBASIC27.8■■■□□ 2.04
ZC3H4Q9UPT8 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC27.8■■■□□ 2.04
ZC3H4Q9UPT8 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
ZC3H4Q9UPT8 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC27.8■■■□□ 2.04
ZC3H4Q9UPT8 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
ZC3H4Q9UPT8 AC104771.1-201ENST00000603335 964 ntBASIC27.8■■■□□ 2.04
ZC3H4Q9UPT8 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC27.8■■■□□ 2.04
ZC3H4Q9UPT8 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
ZC3H4Q9UPT8 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
ZC3H4Q9UPT8 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC27.8■■■□□ 2.04
ZC3H4Q9UPT8 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC27.79■■■□□ 2.04
ZC3H4Q9UPT8 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
ZC3H4Q9UPT8 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
ZC3H4Q9UPT8 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
ZC3H4Q9UPT8 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC27.79■■■□□ 2.04
ZC3H4Q9UPT8 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC27.78■■■□□ 2.04
ZC3H4Q9UPT8 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
ZC3H4Q9UPT8 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms