Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 AC009102.2-201ENST00000606772 1639 ntBASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLCF1Q9UBD9 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLCF1Q9UBD9 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCF1Q9UBD9 ALDH1A3-203ENST00000557963 1670 ntBASIC20.3■□□□□ 0.84
CLCF1Q9UBD9 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.3■□□□□ 0.84
CLCF1Q9UBD9 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CLCF1Q9UBD9 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCF1Q9UBD9 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLCF1Q9UBD9 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CLCF1Q9UBD9 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.29■□□□□ 0.84
CLCF1Q9UBD9 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CLCF1Q9UBD9 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLCF1Q9UBD9 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLCF1Q9UBD9 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLCF1Q9UBD9 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLCF1Q9UBD9 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLCF1Q9UBD9 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLCF1Q9UBD9 AC135731.1-201ENST00000569415 2548 ntBASIC20.29■□□□□ 0.84
CLCF1Q9UBD9 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLCF1Q9UBD9 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLCF1Q9UBD9 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.28■□□□□ 0.84
CLCF1Q9UBD9 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLCF1Q9UBD9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.28■□□□□ 0.84
CLCF1Q9UBD9 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLCF1Q9UBD9 AC133561.4-201ENST00000566112 224 ntBASIC20.28■□□□□ 0.84
CLCF1Q9UBD9 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.28■□□□□ 0.84
CLCF1Q9UBD9 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLCF1Q9UBD9 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLCF1Q9UBD9 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLCF1Q9UBD9 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.27■□□□□ 0.84
CLCF1Q9UBD9 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLCF1Q9UBD9 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLCF1Q9UBD9 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLCF1Q9UBD9 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.27■□□□□ 0.84
CLCF1Q9UBD9 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CLCF1Q9UBD9 AC106739.1-201ENST00000617035 715 ntBASIC20.27■□□□□ 0.84
CLCF1Q9UBD9 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLCF1Q9UBD9 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CLCF1Q9UBD9 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CLCF1Q9UBD9 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLCF1Q9UBD9 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.26■□□□□ 0.83
CLCF1Q9UBD9 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLCF1Q9UBD9 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLCF1Q9UBD9 UNC93B3-201ENST00000308076 687 ntBASIC20.26■□□□□ 0.83
CLCF1Q9UBD9 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CLCF1Q9UBD9 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.26■□□□□ 0.83
CLCF1Q9UBD9 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.26■□□□□ 0.83
CLCF1Q9UBD9 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.26■□□□□ 0.83
CLCF1Q9UBD9 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
CLCF1Q9UBD9 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.26■□□□□ 0.83
CLCF1Q9UBD9 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.26■□□□□ 0.83
CLCF1Q9UBD9 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLCF1Q9UBD9 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLCF1Q9UBD9 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLCF1Q9UBD9 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.25■□□□□ 0.83
CLCF1Q9UBD9 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLCF1Q9UBD9 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.25■□□□□ 0.83
CLCF1Q9UBD9 C17orf82-201ENST00000623772 1530 ntBASIC20.25■□□□□ 0.83
CLCF1Q9UBD9 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 DUX4L19-201ENST00000557448 1267 ntBASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 AL136162.1-201ENST00000607711 1078 ntBASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 AC092171.4-201ENST00000609130 632 ntBASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CLCF1Q9UBD9 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.23■□□□□ 0.83
CLCF1Q9UBD9 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms