Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
USP42Q9H9J4 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC29.2■■■□□ 2.27
USP42Q9H9J4 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC29.2■■■□□ 2.27
USP42Q9H9J4 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
USP42Q9H9J4 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
USP42Q9H9J4 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC29.2■■■□□ 2.26
USP42Q9H9J4 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC29.19■■■□□ 2.26
USP42Q9H9J4 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
USP42Q9H9J4 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
USP42Q9H9J4 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC29.19■■■□□ 2.26
USP42Q9H9J4 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC29.19■■■□□ 2.26
USP42Q9H9J4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC29.19■■■□□ 2.26
USP42Q9H9J4 AC136469.2-201ENST00000623944 1028 ntBASIC29.19■■■□□ 2.26
USP42Q9H9J4 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
USP42Q9H9J4 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
USP42Q9H9J4 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
USP42Q9H9J4 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
USP42Q9H9J4 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
USP42Q9H9J4 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
USP42Q9H9J4 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
USP42Q9H9J4 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC29.17■■■□□ 2.26
USP42Q9H9J4 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
USP42Q9H9J4 C17orf82-201ENST00000623772 1530 ntBASIC29.16■■■□□ 2.26
USP42Q9H9J4 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC29.16■■■□□ 2.26
USP42Q9H9J4 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC29.16■■■□□ 2.26
USP42Q9H9J4 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC29.16■■■□□ 2.26
USP42Q9H9J4 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC29.16■■■□□ 2.26
USP42Q9H9J4 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
USP42Q9H9J4 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
USP42Q9H9J4 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC29.15■■■□□ 2.26
USP42Q9H9J4 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
USP42Q9H9J4 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC29.15■■■□□ 2.26
USP42Q9H9J4 HES6-206ENST00000409574 738 ntTSL 2 BASIC29.15■■■□□ 2.26
USP42Q9H9J4 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
USP42Q9H9J4 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
USP42Q9H9J4 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
USP42Q9H9J4 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
USP42Q9H9J4 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
USP42Q9H9J4 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC29.14■■■□□ 2.25
USP42Q9H9J4 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
USP42Q9H9J4 STK32C-205ENST00000456004 607 ntTSL 2 BASIC29.14■■■□□ 2.25
USP42Q9H9J4 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC29.13■■■□□ 2.25
USP42Q9H9J4 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
USP42Q9H9J4 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
USP42Q9H9J4 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
USP42Q9H9J4 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
USP42Q9H9J4 SP2-202ENST00000613139 908 ntTSL 5 BASIC29.13■■■□□ 2.25
USP42Q9H9J4 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
USP42Q9H9J4 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC29.13■■■□□ 2.25
USP42Q9H9J4 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC29.12■■■□□ 2.25
USP42Q9H9J4 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
USP42Q9H9J4 AC006455.2-201ENST00000429931 906 ntBASIC29.12■■■□□ 2.25
USP42Q9H9J4 CEBPA-AS1-201ENST00000592982 2198 ntBASIC29.12■■■□□ 2.25
USP42Q9H9J4 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
USP42Q9H9J4 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC29.12■■■□□ 2.25
USP42Q9H9J4 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC29.11■■■□□ 2.25
USP42Q9H9J4 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
USP42Q9H9J4 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
USP42Q9H9J4 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
USP42Q9H9J4 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC29.11■■■□□ 2.25
USP42Q9H9J4 AC241377.3-202ENST00000626088 1088 ntBASIC29.11■■■□□ 2.25
USP42Q9H9J4 AC241585.3-202ENST00000628937 1088 ntBASIC29.11■■■□□ 2.25
USP42Q9H9J4 AC245100.8-202ENST00000629247 1058 ntBASIC29.11■■■□□ 2.25
USP42Q9H9J4 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC29.11■■■□□ 2.25
USP42Q9H9J4 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
USP42Q9H9J4 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC29.11■■■□□ 2.25
USP42Q9H9J4 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC29.1■■■□□ 2.25
USP42Q9H9J4 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
USP42Q9H9J4 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
USP42Q9H9J4 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
USP42Q9H9J4 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC29.1■■■□□ 2.25
USP42Q9H9J4 MPST-208ENST00000628507 698 ntTSL 5 BASIC29.1■■■□□ 2.25
USP42Q9H9J4 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
USP42Q9H9J4 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
USP42Q9H9J4 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
USP42Q9H9J4 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC29.09■■■□□ 2.25
USP42Q9H9J4 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC29.09■■■□□ 2.25
USP42Q9H9J4 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC29.09■■■□□ 2.25
USP42Q9H9J4 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC29.09■■■□□ 2.25
USP42Q9H9J4 AC233992.3-201ENST00000607491 485 ntBASIC29.09■■■□□ 2.25
USP42Q9H9J4 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC29.09■■■□□ 2.25
USP42Q9H9J4 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
USP42Q9H9J4 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
USP42Q9H9J4 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
USP42Q9H9J4 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC29.08■■■□□ 2.25
USP42Q9H9J4 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
USP42Q9H9J4 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
USP42Q9H9J4 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC29.08■■■□□ 2.25
USP42Q9H9J4 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
USP42Q9H9J4 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC29.07■■■□□ 2.24
USP42Q9H9J4 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
USP42Q9H9J4 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
USP42Q9H9J4 BX842568.3-201ENST00000418104 571 ntBASIC29.07■■■□□ 2.24
USP42Q9H9J4 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC29.07■■■□□ 2.24
USP42Q9H9J4 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC29.07■■■□□ 2.24
USP42Q9H9J4 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC29.07■■■□□ 2.24
USP42Q9H9J4 SLC6A10P-202ENST00000431994 2058 ntBASIC29.07■■■□□ 2.24
USP42Q9H9J4 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
USP42Q9H9J4 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
USP42Q9H9J4 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms