Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS1Q99742 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS1Q99742 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.74■□□□□ 0.91
NPAS1Q99742 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS1Q99742 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.74■□□□□ 0.91
NPAS1Q99742 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.74■□□□□ 0.91
NPAS1Q99742 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS1Q99742 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS1Q99742 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
NPAS1Q99742 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.73■□□□□ 0.91
NPAS1Q99742 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS1Q99742 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS1Q99742 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NPAS1Q99742 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.73■□□□□ 0.91
NPAS1Q99742 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
NPAS1Q99742 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.73■□□□□ 0.91
NPAS1Q99742 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.73■□□□□ 0.91
NPAS1Q99742 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.73■□□□□ 0.91
NPAS1Q99742 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.73■□□□□ 0.91
NPAS1Q99742 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.73■□□□□ 0.91
NPAS1Q99742 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
NPAS1Q99742 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
NPAS1Q99742 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
NPAS1Q99742 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
NPAS1Q99742 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
NPAS1Q99742 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.73■□□□□ 0.91
NPAS1Q99742 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPAS1Q99742 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPAS1Q99742 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.72■□□□□ 0.91
NPAS1Q99742 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
NPAS1Q99742 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
NPAS1Q99742 AC010997.5-201ENST00000609182 354 ntBASIC20.72■□□□□ 0.91
NPAS1Q99742 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPAS1Q99742 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NPAS1Q99742 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.72■□□□□ 0.91
NPAS1Q99742 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.71■□□□□ 0.91
NPAS1Q99742 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPAS1Q99742 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPAS1Q99742 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
NPAS1Q99742 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPAS1Q99742 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPAS1Q99742 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NPAS1Q99742 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.71■□□□□ 0.91
NPAS1Q99742 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.71■□□□□ 0.91
NPAS1Q99742 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.71■□□□□ 0.91
NPAS1Q99742 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.71■□□□□ 0.91
NPAS1Q99742 MTDHP2-201ENST00000601468 714 ntBASIC20.71■□□□□ 0.91
NPAS1Q99742 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
NPAS1Q99742 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPAS1Q99742 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NPAS1Q99742 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
NPAS1Q99742 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NPAS1Q99742 KRT16P3-201ENST00000439127 1283 ntBASIC20.7■□□□□ 0.9
NPAS1Q99742 AL356441.2-201ENST00000443009 864 ntBASIC20.7■□□□□ 0.9
NPAS1Q99742 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.7■□□□□ 0.9
NPAS1Q99742 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPAS1Q99742 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPAS1Q99742 AL161729.1-201ENST00000604104 1402 ntBASIC20.7■□□□□ 0.9
NPAS1Q99742 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS1Q99742 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS1Q99742 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS1Q99742 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.69■□□□□ 0.9
NPAS1Q99742 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.69■□□□□ 0.9
NPAS1Q99742 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.69■□□□□ 0.9
NPAS1Q99742 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS1Q99742 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.69■□□□□ 0.9
NPAS1Q99742 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS1Q99742 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS1Q99742 ALDH1A3-203ENST00000557963 1670 ntBASIC20.69■□□□□ 0.9
NPAS1Q99742 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS1Q99742 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.69■□□□□ 0.9
NPAS1Q99742 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPAS1Q99742 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
NPAS1Q99742 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS1Q99742 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS1Q99742 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.68■□□□□ 0.9
NPAS1Q99742 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
NPAS1Q99742 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS1Q99742 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS1Q99742 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
NPAS1Q99742 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.68■□□□□ 0.9
NPAS1Q99742 MIR6722-201ENST00000617286 78 ntBASIC20.68■□□□□ 0.9
NPAS1Q99742 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS1Q99742 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS1Q99742 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS1Q99742 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.68■□□□□ 0.9
NPAS1Q99742 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS1Q99742 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS1Q99742 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPAS1Q99742 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.68■□□□□ 0.9
NPAS1Q99742 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.67■□□□□ 0.9
NPAS1Q99742 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPAS1Q99742 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPAS1Q99742 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
NPAS1Q99742 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPAS1Q99742 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPAS1Q99742 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.67■□□□□ 0.9
NPAS1Q99742 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
NPAS1Q99742 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPAS1Q99742 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms