Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC38.58■■■■□ 3.77
IFT140Q96RY7 AC006015.1-201ENST00000429970 570 ntBASIC38.58■■■■□ 3.77
IFT140Q96RY7 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC38.58■■■■□ 3.77
IFT140Q96RY7 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC38.58■■■■□ 3.77
IFT140Q96RY7 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC38.58■■■■□ 3.77
IFT140Q96RY7 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC38.57■■■■□ 3.77
IFT140Q96RY7 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC38.57■■■■□ 3.76
IFT140Q96RY7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC38.57■■■■□ 3.76
IFT140Q96RY7 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC38.57■■■■□ 3.76
IFT140Q96RY7 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC38.57■■■■□ 3.76
IFT140Q96RY7 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC38.56■■■■□ 3.76
IFT140Q96RY7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC38.56■■■■□ 3.76
IFT140Q96RY7 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC38.56■■■■□ 3.76
IFT140Q96RY7 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC38.56■■■■□ 3.76
IFT140Q96RY7 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC38.55■■■■□ 3.76
IFT140Q96RY7 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC38.55■■■■□ 3.76
IFT140Q96RY7 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC38.55■■■■□ 3.76
IFT140Q96RY7 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC38.55■■■■□ 3.76
IFT140Q96RY7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC38.55■■■■□ 3.76
IFT140Q96RY7 AC080038.1-201ENST00000611274 1154 ntBASIC38.55■■■■□ 3.76
IFT140Q96RY7 SHF-208ENST00000560734 1731 ntTSL 3 BASIC38.55■■■■□ 3.76
IFT140Q96RY7 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC38.55■■■■□ 3.76
IFT140Q96RY7 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC38.55■■■■□ 3.76
IFT140Q96RY7 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC38.55■■■■□ 3.76
IFT140Q96RY7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC38.54■■■■□ 3.76
IFT140Q96RY7 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC38.54■■■■□ 3.76
IFT140Q96RY7 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC38.54■■■■□ 3.76
IFT140Q96RY7 AC104771.1-201ENST00000603335 964 ntBASIC38.54■■■■□ 3.76
IFT140Q96RY7 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC38.54■■■■□ 3.76
IFT140Q96RY7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC38.54■■■■□ 3.76
IFT140Q96RY7 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC38.54■■■■□ 3.76
IFT140Q96RY7 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC38.54■■■■□ 3.76
IFT140Q96RY7 KRT18P61-201ENST00000585825 1298 ntBASIC38.54■■■■□ 3.76
IFT140Q96RY7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC38.54■■■■□ 3.76
IFT140Q96RY7 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC38.53■■■■□ 3.76
IFT140Q96RY7 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC38.53■■■■□ 3.76
IFT140Q96RY7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC38.53■■■■□ 3.76
IFT140Q96RY7 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC38.53■■■■□ 3.76
IFT140Q96RY7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC38.53■■■■□ 3.76
IFT140Q96RY7 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC38.53■■■■□ 3.76
IFT140Q96RY7 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC38.53■■■■□ 3.76
IFT140Q96RY7 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC38.53■■■■□ 3.76
IFT140Q96RY7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC38.53■■■■□ 3.76
IFT140Q96RY7 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC38.53■■■■□ 3.76
IFT140Q96RY7 pRNA.6-201ENST00000610482 90 ntBASIC38.53■■■■□ 3.76
IFT140Q96RY7 pRNA.5-201ENST00000612139 90 ntBASIC38.53■■■■□ 3.76
IFT140Q96RY7 pRNA.11-201ENST00000618423 90 ntBASIC38.53■■■■□ 3.76
IFT140Q96RY7 pRNA.13-201ENST00000619112 90 ntBASIC38.53■■■■□ 3.76
IFT140Q96RY7 AC073111.5-205ENST00000641717 521 ntBASIC38.53■■■■□ 3.76
IFT140Q96RY7 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC38.52■■■■□ 3.76
IFT140Q96RY7 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC38.52■■■■□ 3.76
IFT140Q96RY7 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC38.52■■■■□ 3.76
IFT140Q96RY7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC38.52■■■■□ 3.76
IFT140Q96RY7 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC38.52■■■■□ 3.76
IFT140Q96RY7 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC38.52■■■■□ 3.76
IFT140Q96RY7 GXYLT1P5-201ENST00000614548 1189 ntBASIC38.52■■■■□ 3.76
IFT140Q96RY7 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC38.51■■■■□ 3.76
IFT140Q96RY7 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC38.51■■■■□ 3.76
IFT140Q96RY7 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC38.51■■■■□ 3.76
IFT140Q96RY7 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC38.51■■■■□ 3.76
IFT140Q96RY7 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC38.5■■■■□ 3.75
IFT140Q96RY7 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC38.5■■■■□ 3.75
IFT140Q96RY7 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC38.5■■■■□ 3.75
IFT140Q96RY7 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC38.5■■■■□ 3.75
IFT140Q96RY7 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC38.49■■■■□ 3.75
IFT140Q96RY7 CDCA4P2-201ENST00000441182 718 ntBASIC38.49■■■■□ 3.75
IFT140Q96RY7 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC38.49■■■■□ 3.75
IFT140Q96RY7 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC38.49■■■■□ 3.75
IFT140Q96RY7 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC38.49■■■■□ 3.75
IFT140Q96RY7 LINC02228-203ENST00000641970 1355 ntBASIC38.49■■■■□ 3.75
IFT140Q96RY7 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC38.49■■■■□ 3.75
IFT140Q96RY7 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC38.49■■■■□ 3.75
IFT140Q96RY7 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC38.48■■■■□ 3.75
IFT140Q96RY7 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC38.47■■■■□ 3.75
IFT140Q96RY7 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC38.47■■■■□ 3.75
IFT140Q96RY7 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC38.47■■■■□ 3.75
IFT140Q96RY7 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC38.47■■■■□ 3.75
IFT140Q96RY7 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC38.47■■■■□ 3.75
IFT140Q96RY7 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC38.47■■■■□ 3.75
IFT140Q96RY7 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC38.47■■■■□ 3.75
IFT140Q96RY7 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC38.47■■■■□ 3.75
IFT140Q96RY7 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC38.47■■■■□ 3.75
IFT140Q96RY7 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC38.47■■■■□ 3.75
IFT140Q96RY7 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC38.46■■■■□ 3.75
IFT140Q96RY7 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC38.46■■■■□ 3.75
IFT140Q96RY7 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC38.46■■■■□ 3.75
IFT140Q96RY7 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC38.46■■■■□ 3.75
IFT140Q96RY7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC38.45■■■■□ 3.75
IFT140Q96RY7 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC38.45■■■■□ 3.75
IFT140Q96RY7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC38.45■■■■□ 3.75
IFT140Q96RY7 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC38.44■■■■□ 3.74
IFT140Q96RY7 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC38.44■■■■□ 3.74
IFT140Q96RY7 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC38.44■■■■□ 3.74
IFT140Q96RY7 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC38.44■■■■□ 3.74
IFT140Q96RY7 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC38.44■■■■□ 3.74
IFT140Q96RY7 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC38.44■■■■□ 3.74
IFT140Q96RY7 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC38.44■■■■□ 3.74
IFT140Q96RY7 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC38.44■■■■□ 3.74
IFT140Q96RY7 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC38.44■■■■□ 3.74
IFT140Q96RY7 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC38.43■■■■□ 3.74
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms