Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SHROOM3Q8TF72 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SHROOM3Q8TF72 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
SHROOM3Q8TF72 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.34■■□□□ 1.33
SHROOM3Q8TF72 AC092028.1-203ENST00000608262 953 ntBASIC23.34■■□□□ 1.33
SHROOM3Q8TF72 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SHROOM3Q8TF72 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
SHROOM3Q8TF72 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
SHROOM3Q8TF72 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SHROOM3Q8TF72 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.33■■□□□ 1.33
SHROOM3Q8TF72 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
SHROOM3Q8TF72 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.33■■□□□ 1.33
SHROOM3Q8TF72 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
SHROOM3Q8TF72 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.33■■□□□ 1.33
SHROOM3Q8TF72 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SHROOM3Q8TF72 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.33■■□□□ 1.33
SHROOM3Q8TF72 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.33■■□□□ 1.33
SHROOM3Q8TF72 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
SHROOM3Q8TF72 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SHROOM3Q8TF72 AC004448.1-201ENST00000458332 883 ntBASIC23.32■■□□□ 1.32
SHROOM3Q8TF72 GRAMD4P7-201ENST00000578182 1232 ntBASIC23.32■■□□□ 1.32
SHROOM3Q8TF72 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
SHROOM3Q8TF72 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SHROOM3Q8TF72 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 MIR638-201ENST00000385237 100 ntBASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 KRT16P3-201ENST00000439127 1283 ntBASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 UNC93B8-201ENST00000511903 705 ntBASIC23.31■■□□□ 1.32
SHROOM3Q8TF72 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SHROOM3Q8TF72 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SHROOM3Q8TF72 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SHROOM3Q8TF72 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.3■■□□□ 1.32
SHROOM3Q8TF72 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SHROOM3Q8TF72 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.3■■□□□ 1.32
SHROOM3Q8TF72 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SHROOM3Q8TF72 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SHROOM3Q8TF72 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
SHROOM3Q8TF72 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.29■■□□□ 1.32
SHROOM3Q8TF72 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC23.29■■□□□ 1.32
SHROOM3Q8TF72 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SHROOM3Q8TF72 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
SHROOM3Q8TF72 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.29■■□□□ 1.32
SHROOM3Q8TF72 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SHROOM3Q8TF72 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SHROOM3Q8TF72 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.29■■□□□ 1.32
SHROOM3Q8TF72 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 MTDHP2-201ENST00000601468 714 ntBASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
SHROOM3Q8TF72 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SHROOM3Q8TF72 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SHROOM3Q8TF72 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.27■■□□□ 1.32
SHROOM3Q8TF72 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.27■■□□□ 1.32
SHROOM3Q8TF72 AL161729.1-201ENST00000604104 1402 ntBASIC23.27■■□□□ 1.32
SHROOM3Q8TF72 ALDH1A3-203ENST00000557963 1670 ntBASIC23.26■■□□□ 1.31
SHROOM3Q8TF72 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.26■■□□□ 1.31
SHROOM3Q8TF72 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SHROOM3Q8TF72 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SHROOM3Q8TF72 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
SHROOM3Q8TF72 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SHROOM3Q8TF72 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SHROOM3Q8TF72 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SHROOM3Q8TF72 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SHROOM3Q8TF72 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
SHROOM3Q8TF72 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC23.25■■□□□ 1.31
SHROOM3Q8TF72 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
SHROOM3Q8TF72 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.25■■□□□ 1.31
SHROOM3Q8TF72 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23.25■■□□□ 1.31
SHROOM3Q8TF72 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SHROOM3Q8TF72 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
SHROOM3Q8TF72 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
SHROOM3Q8TF72 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SHROOM3Q8TF72 CREM-229ENST00000474362 1030 ntTSL 2 BASIC23.24■■□□□ 1.31
SHROOM3Q8TF72 AC079630.1-202ENST00000618127 1840 ntBASIC23.24■■□□□ 1.31
SHROOM3Q8TF72 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
SHROOM3Q8TF72 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms