Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SOX3P41225 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.35■■□□□ 1.01
SOX3P41225 MTDHP2-201ENST00000601468 714 ntBASIC21.35■■□□□ 1.01
SOX3P41225 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.35■■□□□ 1.01
SOX3P41225 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
SOX3P41225 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.34■■□□□ 1.01
SOX3P41225 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.34■■□□□ 1.01
SOX3P41225 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.34■■□□□ 1.01
SOX3P41225 AC010997.5-201ENST00000609182 354 ntBASIC21.34■■□□□ 1.01
SOX3P41225 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.34■■□□□ 1.01
SOX3P41225 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
SOX3P41225 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SOX3P41225 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SOX3P41225 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.33■■□□□ 1.01
SOX3P41225 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.33■■□□□ 1.01
SOX3P41225 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.33■■□□□ 1.01
SOX3P41225 SNX5-217ENST00000606557 1087 ntBASIC21.33■■□□□ 1.01
SOX3P41225 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.33■■□□□ 1.01
SOX3P41225 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.33■■□□□ 1.01
SOX3P41225 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.33■■□□□ 1
SOX3P41225 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SOX3P41225 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.33■■□□□ 1
SOX3P41225 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.33■■□□□ 1
SOX3P41225 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
SOX3P41225 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SOX3P41225 AP003733.4-201ENST00000623785 1697 ntBASIC21.32■■□□□ 1
SOX3P41225 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SOX3P41225 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SOX3P41225 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SOX3P41225 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.32■■□□□ 1
SOX3P41225 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SOX3P41225 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SOX3P41225 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.31■■□□□ 1
SOX3P41225 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SOX3P41225 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.31■■□□□ 1
SOX3P41225 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.31■■□□□ 1
SOX3P41225 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SOX3P41225 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.31■■□□□ 1
SOX3P41225 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SOX3P41225 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.3■■□□□ 1
SOX3P41225 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.3■■□□□ 1
SOX3P41225 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.3■■□□□ 1
SOX3P41225 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.3■■□□□ 1
SOX3P41225 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.3■■□□□ 1
SOX3P41225 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.3■■□□□ 1
SOX3P41225 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SOX3P41225 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.3■■□□□ 1
SOX3P41225 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.3■■□□□ 1
SOX3P41225 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SOX3P41225 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.3■■□□□ 1
SOX3P41225 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.3■■□□□ 1
SOX3P41225 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
SOX3P41225 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SOX3P41225 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SOX3P41225 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SOX3P41225 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.29■■□□□ 1
SOX3P41225 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.29■■□□□ 1
SOX3P41225 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.29■■□□□ 1
SOX3P41225 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SOX3P41225 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.28■■□□□ 1
SOX3P41225 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.28■■□□□ 1
SOX3P41225 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.28■■□□□ 1
SOX3P41225 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.28■■□□□ 1
SOX3P41225 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.28■■□□□ 1
SOX3P41225 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.28■■□□□ 1
SOX3P41225 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SOX3P41225 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.28■■□□□ 1
SOX3P41225 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.28■■□□□ 1
SOX3P41225 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SOX3P41225 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SOX3P41225 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SOX3P41225 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SOX3P41225 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SOX3P41225 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SOX3P41225 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
SOX3P41225 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.27■■□□□ 1
SOX3P41225 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SOX3P41225 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SOX3P41225 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SOX3P41225 LINC00543-201ENST00000567234 1845 ntBASIC21.27■□□□□ 0.99
SOX3P41225 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
SOX3P41225 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SOX3P41225 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.26■□□□□ 0.99
SOX3P41225 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.26■□□□□ 0.99
SOX3P41225 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
SOX3P41225 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.26■□□□□ 0.99
SOX3P41225 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.26■□□□□ 0.99
SOX3P41225 MIR6724-1-201ENST00000616420 92 ntBASIC21.26■□□□□ 0.99
SOX3P41225 MIR6724-2-201ENST00000616483 92 ntBASIC21.26■□□□□ 0.99
SOX3P41225 MIR6724-4-201ENST00000617390 92 ntBASIC21.26■□□□□ 0.99
SOX3P41225 MIR6724-3-201ENST00000622482 92 ntBASIC21.26■□□□□ 0.99
SOX3P41225 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SOX3P41225 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SOX3P41225 AC131274.2-201ENST00000580697 1507 ntBASIC21.25■□□□□ 0.99
SOX3P41225 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SOX3P41225 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SOX3P41225 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SOX3P41225 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.25■□□□□ 0.99
SOX3P41225 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.25■□□□□ 0.99
SOX3P41225 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms