Protein–RNA interactions for Protein: P29353

SHC1, SHC-transforming protein 1, humanhuman

Predictions only

Length 583 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHC1P29353 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.81■□□□□ 0.92
SHC1P29353 MIR4787-201ENST00000607364 84 ntBASIC20.81■□□□□ 0.92
SHC1P29353 AC131274.2-201ENST00000580697 1507 ntBASIC20.81■□□□□ 0.92
SHC1P29353 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.81■□□□□ 0.92
SHC1P29353 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHC1P29353 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.8■□□□□ 0.92
SHC1P29353 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHC1P29353 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHC1P29353 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.8■□□□□ 0.92
SHC1P29353 KRT125P-201ENST00000546827 989 ntBASIC20.8■□□□□ 0.92
SHC1P29353 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SHC1P29353 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHC1P29353 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHC1P29353 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
SHC1P29353 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHC1P29353 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SHC1P29353 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.8■□□□□ 0.92
SHC1P29353 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHC1P29353 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHC1P29353 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SHC1P29353 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHC1P29353 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.79■□□□□ 0.92
SHC1P29353 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.79■□□□□ 0.92
SHC1P29353 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHC1P29353 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHC1P29353 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHC1P29353 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHC1P29353 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHC1P29353 AC141586.4-201ENST00000624558 1573 ntBASIC20.78■□□□□ 0.92
SHC1P29353 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.78■□□□□ 0.92
SHC1P29353 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHC1P29353 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.78■□□□□ 0.92
SHC1P29353 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.78■□□□□ 0.92
SHC1P29353 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHC1P29353 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHC1P29353 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.78■□□□□ 0.92
SHC1P29353 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
SHC1P29353 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
SHC1P29353 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.77■□□□□ 0.92
SHC1P29353 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SHC1P29353 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHC1P29353 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHC1P29353 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.77■□□□□ 0.92
SHC1P29353 GUSBP5-201ENST00000418136 578 ntBASIC20.77■□□□□ 0.92
SHC1P29353 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHC1P29353 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.77■□□□□ 0.92
SHC1P29353 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.77■□□□□ 0.92
SHC1P29353 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHC1P29353 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.77■□□□□ 0.91
SHC1P29353 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SHC1P29353 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHC1P29353 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.76■□□□□ 0.91
SHC1P29353 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHC1P29353 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHC1P29353 DUSP8P5-201ENST00000422884 1815 ntBASIC20.76■□□□□ 0.91
SHC1P29353 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.76■□□□□ 0.91
SHC1P29353 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHC1P29353 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHC1P29353 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHC1P29353 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHC1P29353 AC092028.1-203ENST00000608262 953 ntBASIC20.75■□□□□ 0.91
SHC1P29353 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.75■□□□□ 0.91
SHC1P29353 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SHC1P29353 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHC1P29353 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHC1P29353 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.75■□□□□ 0.91
SHC1P29353 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHC1P29353 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.74■□□□□ 0.91
SHC1P29353 SNX5-217ENST00000606557 1087 ntBASIC20.74■□□□□ 0.91
SHC1P29353 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SHC1P29353 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHC1P29353 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHC1P29353 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SHC1P29353 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.74■□□□□ 0.91
SHC1P29353 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHC1P29353 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHC1P29353 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHC1P29353 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHC1P29353 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHC1P29353 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SHC1P29353 AC004812.2-201ENST00000611079 2094 ntBASIC20.73■□□□□ 0.91
SHC1P29353 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHC1P29353 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHC1P29353 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHC1P29353 TSPY9P-201ENST00000440215 945 ntBASIC20.73■□□□□ 0.91
SHC1P29353 TSPY11P-201ENST00000442607 1045 ntBASIC20.73■□□□□ 0.91
SHC1P29353 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.73■□□□□ 0.91
SHC1P29353 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.73■□□□□ 0.91
SHC1P29353 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.73■□□□□ 0.91
SHC1P29353 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.73■□□□□ 0.91
SHC1P29353 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHC1P29353 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.73■□□□□ 0.91
SHC1P29353 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.73■□□□□ 0.91
SHC1P29353 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SHC1P29353 AC079834.2-201ENST00000609776 1949 ntBASIC20.72■□□□□ 0.91
SHC1P29353 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHC1P29353 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.72■□□□□ 0.91
SHC1P29353 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.72■□□□□ 0.91
SHC1P29353 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.72■□□□□ 0.91
SHC1P29353 UNC93B8-201ENST00000511903 705 ntBASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms