Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.22■□□□□ 0.67
USF1P22415 RARRES2P6-201ENST00000567333 442 ntBASIC19.22■□□□□ 0.67
USF1P22415 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.22■□□□□ 0.67
USF1P22415 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.22■□□□□ 0.67
USF1P22415 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
USF1P22415 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USF1P22415 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
USF1P22415 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
USF1P22415 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC19.22■□□□□ 0.67
USF1P22415 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USF1P22415 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USF1P22415 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.21■□□□□ 0.67
USF1P22415 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
USF1P22415 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.21■□□□□ 0.67
USF1P22415 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.21■□□□□ 0.67
USF1P22415 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USF1P22415 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USF1P22415 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.21■□□□□ 0.67
USF1P22415 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.21■□□□□ 0.67
USF1P22415 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
USF1P22415 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USF1P22415 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USF1P22415 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.2■□□□□ 0.66
USF1P22415 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USF1P22415 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USF1P22415 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USF1P22415 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USF1P22415 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USF1P22415 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USF1P22415 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USF1P22415 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USF1P22415 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.2■□□□□ 0.66
USF1P22415 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.2■□□□□ 0.66
USF1P22415 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USF1P22415 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USF1P22415 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
USF1P22415 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USF1P22415 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USF1P22415 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USF1P22415 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.19■□□□□ 0.66
USF1P22415 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
USF1P22415 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.19■□□□□ 0.66
USF1P22415 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.19■□□□□ 0.66
USF1P22415 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.19■□□□□ 0.66
USF1P22415 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.19■□□□□ 0.66
USF1P22415 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.19■□□□□ 0.66
USF1P22415 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USF1P22415 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USF1P22415 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USF1P22415 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
USF1P22415 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
USF1P22415 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USF1P22415 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USF1P22415 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
USF1P22415 AC022211.4-201ENST00000625094 2161 ntBASIC19.18■□□□□ 0.66
USF1P22415 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USF1P22415 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.18■□□□□ 0.66
USF1P22415 SYT6-210ENST00000641643 1587 ntBASIC19.18■□□□□ 0.66
USF1P22415 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.17■□□□□ 0.66
USF1P22415 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USF1P22415 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
USF1P22415 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USF1P22415 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
USF1P22415 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.17■□□□□ 0.66
USF1P22415 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.17■□□□□ 0.66
USF1P22415 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USF1P22415 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USF1P22415 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.17■□□□□ 0.66
USF1P22415 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USF1P22415 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USF1P22415 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.17■□□□□ 0.66
USF1P22415 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.16■□□□□ 0.66
USF1P22415 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USF1P22415 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USF1P22415 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
USF1P22415 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USF1P22415 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
USF1P22415 AF213884.3-201ENST00000563833 479 ntBASIC19.16■□□□□ 0.66
USF1P22415 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.16■□□□□ 0.66
USF1P22415 AL136967.2-201ENST00000623968 743 ntBASIC19.16■□□□□ 0.66
USF1P22415 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
USF1P22415 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USF1P22415 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USF1P22415 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
USF1P22415 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USF1P22415 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USF1P22415 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
USF1P22415 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USF1P22415 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
USF1P22415 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
USF1P22415 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USF1P22415 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
USF1P22415 AC105265.2-201ENST00000467189 838 ntBASIC19.15■□□□□ 0.66
USF1P22415 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USF1P22415 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.15■□□□□ 0.66
USF1P22415 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
USF1P22415 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.15■□□□□ 0.66
USF1P22415 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USF1P22415 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USF1P22415 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms