Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RAF1P04049 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RAF1P04049 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RAF1P04049 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RAF1P04049 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.53■□□□□ 0.88
RAF1P04049 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.53■□□□□ 0.88
RAF1P04049 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RAF1P04049 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.52■□□□□ 0.88
RAF1P04049 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RAF1P04049 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RAF1P04049 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RAF1P04049 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.52■□□□□ 0.88
RAF1P04049 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RAF1P04049 AC120024.1-201ENST00000562672 995 ntBASIC20.52■□□□□ 0.88
RAF1P04049 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.52■□□□□ 0.88
RAF1P04049 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
RAF1P04049 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RAF1P04049 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
RAF1P04049 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.52■□□□□ 0.87
RAF1P04049 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RAF1P04049 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RAF1P04049 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
RAF1P04049 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RAF1P04049 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.51■□□□□ 0.87
RAF1P04049 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.51■□□□□ 0.87
RAF1P04049 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RAF1P04049 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RAF1P04049 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RAF1P04049 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.5■□□□□ 0.87
RAF1P04049 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RAF1P04049 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RAF1P04049 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.5■□□□□ 0.87
RAF1P04049 AC131281.2-201ENST00000520478 145 ntBASIC20.5■□□□□ 0.87
RAF1P04049 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.5■□□□□ 0.87
RAF1P04049 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RAF1P04049 AC092028.1-203ENST00000608262 953 ntBASIC20.5■□□□□ 0.87
RAF1P04049 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RAF1P04049 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
RAF1P04049 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
RAF1P04049 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RAF1P04049 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RAF1P04049 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.49■□□□□ 0.87
RAF1P04049 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RAF1P04049 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RAF1P04049 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.49■□□□□ 0.87
RAF1P04049 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RAF1P04049 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RAF1P04049 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.49■□□□□ 0.87
RAF1P04049 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RAF1P04049 DUSP8P5-201ENST00000422884 1815 ntBASIC20.48■□□□□ 0.87
RAF1P04049 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RAF1P04049 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
RAF1P04049 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RAF1P04049 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RAF1P04049 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RAF1P04049 AL136116.3-201ENST00000402907 1138 ntBASIC20.48■□□□□ 0.87
RAF1P04049 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.48■□□□□ 0.87
RAF1P04049 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.48■□□□□ 0.87
RAF1P04049 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.48■□□□□ 0.87
RAF1P04049 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.48■□□□□ 0.87
RAF1P04049 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RAF1P04049 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RAF1P04049 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
RAF1P04049 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RAF1P04049 AC004812.2-201ENST00000611079 2094 ntBASIC20.47■□□□□ 0.87
RAF1P04049 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.47■□□□□ 0.87
RAF1P04049 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.47■□□□□ 0.87
RAF1P04049 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
RAF1P04049 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.47■□□□□ 0.87
RAF1P04049 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RAF1P04049 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RAF1P04049 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RAF1P04049 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.46■□□□□ 0.87
RAF1P04049 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.46■□□□□ 0.87
RAF1P04049 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RAF1P04049 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RAF1P04049 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.45■□□□□ 0.86
RAF1P04049 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RAF1P04049 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.45■□□□□ 0.86
RAF1P04049 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
RAF1P04049 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RAF1P04049 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RAF1P04049 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RAF1P04049 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.44■□□□□ 0.86
RAF1P04049 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RAF1P04049 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RAF1P04049 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
RAF1P04049 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
RAF1P04049 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
RAF1P04049 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RAF1P04049 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
RAF1P04049 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.44■□□□□ 0.86
RAF1P04049 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.44■□□□□ 0.86
RAF1P04049 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.44■□□□□ 0.86
RAF1P04049 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.44■□□□□ 0.86
RAF1P04049 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RAF1P04049 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RAF1P04049 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
RAF1P04049 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RAF1P04049 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms