Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SPTA1P02549 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
SPTA1P02549 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SPTA1P02549 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SPTA1P02549 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.82■□□□□ 0.92
SPTA1P02549 NTF6G-201ENST00000591094 616 ntBASIC20.82■□□□□ 0.92
SPTA1P02549 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.82■□□□□ 0.92
SPTA1P02549 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SPTA1P02549 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.81■□□□□ 0.92
SPTA1P02549 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SPTA1P02549 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SPTA1P02549 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SPTA1P02549 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SPTA1P02549 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SPTA1P02549 AC096887.2-201ENST00000623443 1957 ntBASIC20.81■□□□□ 0.92
SPTA1P02549 ST7-205ENST00000393446 2114 ntTSL 5 BASIC20.8■□□□□ 0.92
SPTA1P02549 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.8■□□□□ 0.92
SPTA1P02549 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.8■□□□□ 0.92
SPTA1P02549 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SPTA1P02549 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SPTA1P02549 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SPTA1P02549 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SPTA1P02549 TSPY26P-201ENST00000476365 1326 ntBASIC20.8■□□□□ 0.92
SPTA1P02549 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.8■□□□□ 0.92
SPTA1P02549 MIR572-201ENST00000384983 95 ntBASIC20.79■□□□□ 0.92
SPTA1P02549 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SPTA1P02549 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SPTA1P02549 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SPTA1P02549 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SPTA1P02549 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.78■□□□□ 0.92
SPTA1P02549 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SPTA1P02549 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.78■□□□□ 0.92
SPTA1P02549 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.77■□□□□ 0.92
SPTA1P02549 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.77■□□□□ 0.92
SPTA1P02549 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.77■□□□□ 0.92
SPTA1P02549 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
SPTA1P02549 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.77■□□□□ 0.92
SPTA1P02549 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SPTA1P02549 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SPTA1P02549 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.76■□□□□ 0.91
SPTA1P02549 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.76■□□□□ 0.91
SPTA1P02549 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SPTA1P02549 AC012414.1-201ENST00000556676 535 ntBASIC20.76■□□□□ 0.91
SPTA1P02549 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SPTA1P02549 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SPTA1P02549 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.76■□□□□ 0.91
SPTA1P02549 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SPTA1P02549 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SPTA1P02549 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.76■□□□□ 0.91
SPTA1P02549 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SPTA1P02549 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SPTA1P02549 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.76■□□□□ 0.91
SPTA1P02549 ST7-202ENST00000323984 2142 ntTSL 5 BASIC20.75■□□□□ 0.91
SPTA1P02549 ST7-207ENST00000393449 2127 ntTSL 5 BASIC20.75■□□□□ 0.91
SPTA1P02549 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SPTA1P02549 KRT18P14-201ENST00000534205 1250 ntBASIC20.75■□□□□ 0.91
SPTA1P02549 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.75■□□□□ 0.91
SPTA1P02549 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SPTA1P02549 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SPTA1P02549 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.75■□□□□ 0.91
SPTA1P02549 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SPTA1P02549 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.75■□□□□ 0.91
SPTA1P02549 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.75■□□□□ 0.91
SPTA1P02549 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SPTA1P02549 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.75■□□□□ 0.91
SPTA1P02549 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.75■□□□□ 0.91
SPTA1P02549 ERN1-208ENST00000606895 2068 ntBASIC20.74■□□□□ 0.91
SPTA1P02549 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SPTA1P02549 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SPTA1P02549 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
SPTA1P02549 AC131274.2-201ENST00000580697 1507 ntBASIC20.74■□□□□ 0.91
SPTA1P02549 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
SPTA1P02549 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SPTA1P02549 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.74■□□□□ 0.91
SPTA1P02549 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SPTA1P02549 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SPTA1P02549 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SPTA1P02549 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SPTA1P02549 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SPTA1P02549 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SPTA1P02549 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SPTA1P02549 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SPTA1P02549 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SPTA1P02549 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SPTA1P02549 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SPTA1P02549 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.73■□□□□ 0.91
SPTA1P02549 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.73■□□□□ 0.91
SPTA1P02549 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
SPTA1P02549 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.73■□□□□ 0.91
SPTA1P02549 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SPTA1P02549 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SPTA1P02549 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.73■□□□□ 0.91
SPTA1P02549 AC126544.1-201ENST00000580842 1059 ntBASIC20.73■□□□□ 0.91
SPTA1P02549 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SPTA1P02549 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SPTA1P02549 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SPTA1P02549 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SPTA1P02549 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.72■□□□□ 0.91
SPTA1P02549 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.72■□□□□ 0.91
SPTA1P02549 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms