Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
HLA-DQA1P01909 AC092068.2-201ENST00000590491 1708 ntBASIC17.11■□□□□ 0.33
HLA-DQA1P01909 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DQA1P01909 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DQA1P01909 AC021231.2-201ENST00000594613 730 ntBASIC17.11■□□□□ 0.33
HLA-DQA1P01909 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HLA-DQA1P01909 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DQA1P01909 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DQA1P01909 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DQA1P01909 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HLA-DQA1P01909 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DQA1P01909 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HLA-DQA1P01909 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HLA-DQA1P01909 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.1■□□□□ 0.33
HLA-DQA1P01909 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HLA-DQA1P01909 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DQA1P01909 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC17.1■□□□□ 0.33
HLA-DQA1P01909 AL121603.2-201ENST00000557373 2117 ntBASIC17.1■□□□□ 0.33
HLA-DQA1P01909 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DQA1P01909 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DQA1P01909 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DQA1P01909 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HLA-DQA1P01909 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HLA-DQA1P01909 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC17.09■□□□□ 0.33
HLA-DQA1P01909 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DQA1P01909 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DQA1P01909 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DQA1P01909 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DQA1P01909 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DQA1P01909 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC17.09■□□□□ 0.33
HLA-DQA1P01909 AC242852.2-201ENST00000615738 1807 ntBASIC17.09■□□□□ 0.33
HLA-DQA1P01909 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DQA1P01909 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HLA-DQA1P01909 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DQA1P01909 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DQA1P01909 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
HLA-DQA1P01909 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.08■□□□□ 0.33
HLA-DQA1P01909 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HLA-DQA1P01909 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HLA-DQA1P01909 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC17.08■□□□□ 0.33
HLA-DQA1P01909 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HLA-DQA1P01909 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC17.08■□□□□ 0.32
HLA-DQA1P01909 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC17.08■□□□□ 0.32
HLA-DQA1P01909 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DQA1P01909 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DQA1P01909 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DQA1P01909 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DQA1P01909 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DQA1P01909 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HLA-DQA1P01909 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
HLA-DQA1P01909 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DQA1P01909 MYB-221ENST00000527615 2381 ntTSL 5 BASIC17.07■□□□□ 0.32
HLA-DQA1P01909 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DQA1P01909 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DQA1P01909 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC17.07■□□□□ 0.32
HLA-DQA1P01909 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DQA1P01909 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HLA-DQA1P01909 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC17.07■□□□□ 0.32
HLA-DQA1P01909 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DQA1P01909 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC17.07■□□□□ 0.32
HLA-DQA1P01909 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DQA1P01909 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.06■□□□□ 0.32
HLA-DQA1P01909 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DQA1P01909 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
HLA-DQA1P01909 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DQA1P01909 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DQA1P01909 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
HLA-DQA1P01909 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
HLA-DQA1P01909 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DQA1P01909 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DQA1P01909 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
HLA-DQA1P01909 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
HLA-DQA1P01909 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HLA-DQA1P01909 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DQA1P01909 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC17.05■□□□□ 0.32
HLA-DQA1P01909 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DQA1P01909 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HLA-DQA1P01909 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
HLA-DQA1P01909 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DQA1P01909 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC17.05■□□□□ 0.32
HLA-DQA1P01909 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 MLEC-202ENST00000412616 841 ntTSL 3 BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 HGH1-207ENST00000628266 258 ntTSL 5 BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DQA1P01909 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DQA1P01909 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms