Protein–RNA interactions for Protein: O15266

SHOX, Short stature homeobox protein, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOXO15266 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.34■□□□□ 0.69
SHOXO15266 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHOXO15266 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHOXO15266 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHOXO15266 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
SHOXO15266 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
SHOXO15266 ECEL1P2-201ENST00000461596 1295 ntBASIC19.33■□□□□ 0.68
SHOXO15266 MBP-237ENST00000579129 1052 ntTSL 5 BASIC19.33■□□□□ 0.68
SHOXO15266 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.33■□□□□ 0.68
SHOXO15266 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.33■□□□□ 0.68
SHOXO15266 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHOXO15266 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SHOXO15266 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHOXO15266 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.32■□□□□ 0.68
SHOXO15266 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHOXO15266 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHOXO15266 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHOXO15266 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SHOXO15266 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHOXO15266 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.32■□□□□ 0.68
SHOXO15266 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SHOXO15266 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHOXO15266 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHOXO15266 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SHOXO15266 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHOXO15266 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.32■□□□□ 0.68
SHOXO15266 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHOXO15266 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.31■□□□□ 0.68
SHOXO15266 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SHOXO15266 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHOXO15266 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOXO15266 MIR4449-201ENST00000578365 66 ntBASIC19.31■□□□□ 0.68
SHOXO15266 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHOXO15266 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOXO15266 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOXO15266 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHOXO15266 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOXO15266 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOXO15266 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SHOXO15266 AL391422.3-201ENST00000603791 2761 ntBASIC19.3■□□□□ 0.68
SHOXO15266 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.3■□□□□ 0.68
SHOXO15266 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOXO15266 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SHOXO15266 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC19.3■□□□□ 0.68
SHOXO15266 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOXO15266 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
SHOXO15266 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOXO15266 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOXO15266 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHOXO15266 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.29■□□□□ 0.68
SHOXO15266 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHOXO15266 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
SHOXO15266 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHOXO15266 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHOXO15266 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SHOXO15266 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SHOXO15266 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHOXO15266 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.29■□□□□ 0.68
SHOXO15266 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHOXO15266 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHOXO15266 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHOXO15266 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.29■□□□□ 0.68
SHOXO15266 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHOXO15266 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SHOXO15266 AF106564.1-201ENST00000607058 2553 ntBASIC19.28■□□□□ 0.68
SHOXO15266 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.28■□□□□ 0.68
SHOXO15266 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC19.28■□□□□ 0.68
SHOXO15266 RP9P-202ENST00000450133 1212 ntBASIC19.28■□□□□ 0.68
SHOXO15266 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.28■□□□□ 0.68
SHOXO15266 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHOXO15266 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.28■□□□□ 0.68
SHOXO15266 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC19.28■□□□□ 0.68
SHOXO15266 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHOXO15266 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHOXO15266 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SHOXO15266 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHOXO15266 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.27■□□□□ 0.67
SHOXO15266 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.67
SHOXO15266 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.27■□□□□ 0.67
SHOXO15266 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHOXO15266 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.26■□□□□ 0.67
SHOXO15266 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.26■□□□□ 0.67
SHOXO15266 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHOXO15266 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHOXO15266 GPX1-201ENST00000419349 1106 ntBASIC19.26■□□□□ 0.67
SHOXO15266 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SHOXO15266 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHOXO15266 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHOXO15266 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
SHOXO15266 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHOXO15266 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SHOXO15266 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.25■□□□□ 0.67
SHOXO15266 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOXO15266 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.25■□□□□ 0.67
SHOXO15266 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.25■□□□□ 0.67
SHOXO15266 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOXO15266 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.25■□□□□ 0.67
SHOXO15266 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOXO15266 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SHOXO15266 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms