Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.08■□□□□ 0.49
COL6A5A8TX70 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A5A8TX70 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A5A8TX70 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A5A8TX70 AC087239.1-201ENST00000622671 572 ntBASIC18.08■□□□□ 0.48
COL6A5A8TX70 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL6A5A8TX70 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A5A8TX70 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A5A8TX70 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
COL6A5A8TX70 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
COL6A5A8TX70 PRORSD1P-201ENST00000295112 541 ntBASIC18.07■□□□□ 0.48
COL6A5A8TX70 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.07■□□□□ 0.48
COL6A5A8TX70 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.07■□□□□ 0.48
COL6A5A8TX70 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC18.07■□□□□ 0.48
COL6A5A8TX70 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC18.07■□□□□ 0.48
COL6A5A8TX70 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.07■□□□□ 0.48
COL6A5A8TX70 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A5A8TX70 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
COL6A5A8TX70 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A5A8TX70 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A5A8TX70 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.06■□□□□ 0.48
COL6A5A8TX70 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC18.06■□□□□ 0.48
COL6A5A8TX70 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
COL6A5A8TX70 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL6A5A8TX70 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
COL6A5A8TX70 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.06■□□□□ 0.48
COL6A5A8TX70 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.06■□□□□ 0.48
COL6A5A8TX70 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC18.06■□□□□ 0.48
COL6A5A8TX70 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
COL6A5A8TX70 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.06■□□□□ 0.48
COL6A5A8TX70 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A5A8TX70 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
COL6A5A8TX70 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A5A8TX70 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.05■□□□□ 0.48
COL6A5A8TX70 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
COL6A5A8TX70 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A5A8TX70 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC18.05■□□□□ 0.48
COL6A5A8TX70 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A5A8TX70 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
COL6A5A8TX70 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A5A8TX70 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
COL6A5A8TX70 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A5A8TX70 IGHV3-19-201ENST00000521488 291 ntBASIC18.05■□□□□ 0.48
COL6A5A8TX70 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
COL6A5A8TX70 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.05■□□□□ 0.48
COL6A5A8TX70 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.05■□□□□ 0.48
COL6A5A8TX70 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
COL6A5A8TX70 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A5A8TX70 AC073210.2-201ENST00000430369 194 ntBASIC18.04■□□□□ 0.48
COL6A5A8TX70 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.04■□□□□ 0.48
COL6A5A8TX70 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC18.04■□□□□ 0.48
COL6A5A8TX70 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A5A8TX70 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL6A5A8TX70 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A5A8TX70 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A5A8TX70 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A5A8TX70 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A5A8TX70 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.04■□□□□ 0.48
COL6A5A8TX70 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL6A5A8TX70 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A5A8TX70 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.03■□□□□ 0.48
COL6A5A8TX70 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A5A8TX70 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A5A8TX70 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
COL6A5A8TX70 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
COL6A5A8TX70 BID-214ENST00000617586 542 ntTSL 5 BASIC18.03■□□□□ 0.48
COL6A5A8TX70 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A5A8TX70 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.02■□□□□ 0.48
COL6A5A8TX70 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
COL6A5A8TX70 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.02■□□□□ 0.48
COL6A5A8TX70 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
COL6A5A8TX70 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL6A5A8TX70 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.02■□□□□ 0.48
COL6A5A8TX70 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.02■□□□□ 0.48
COL6A5A8TX70 AP005435.1-201ENST00000529293 1178 ntBASIC18.02■□□□□ 0.48
COL6A5A8TX70 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.02■□□□□ 0.47
COL6A5A8TX70 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A5A8TX70 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.01■□□□□ 0.47
COL6A5A8TX70 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A5A8TX70 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A5A8TX70 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A5A8TX70 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.01■□□□□ 0.47
COL6A5A8TX70 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.01■□□□□ 0.47
COL6A5A8TX70 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A5A8TX70 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A5A8TX70 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.01■□□□□ 0.47
COL6A5A8TX70 FAM201B-201ENST00000458407 597 ntBASIC18.01■□□□□ 0.47
COL6A5A8TX70 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A5A8TX70 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.01■□□□□ 0.47
COL6A5A8TX70 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A5A8TX70 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL6A5A8TX70 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
COL6A5A8TX70 PROC-203ENST00000409048 1586 ntTSL 5 BASIC18■□□□□ 0.47
COL6A5A8TX70 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18■□□□□ 0.47
COL6A5A8TX70 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL6A5A8TX70 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
COL6A5A8TX70 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL6A5A8TX70 AC069152.1-201ENST00000438030 544 ntBASIC18■□□□□ 0.47
COL6A5A8TX70 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18■□□□□ 0.47
COL6A5A8TX70 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms