Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 RCC2P8-201ENST00000502779 1035 ntBASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 AL161670.2-201ENST00000557650 1227 ntBASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 RN7SL774P-201ENST00000577467 290 ntBASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 MIR3619-201ENST00000579667 83 ntBASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP4AQ9BY43 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 CYP4F23P-201ENST00000593402 1579 ntBASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 SDCCAG3P2-201ENST00000326105 1023 ntBASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AL662890.1-201ENST00000396818 632 ntBASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 SLC16A6P1-201ENST00000413214 1059 ntBASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 KRTAP19-9P-201ENST00000421795 191 ntBASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AC005077.2-201ENST00000449786 690 ntBASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AC022447.6-201ENST00000515522 438 ntBASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 ADM-202ENST00000524948 584 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AC140658.4-201ENST00000561990 352 ntBASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AC124068.2-201ENST00000569473 1109 ntBASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AC021016.3-201ENST00000608367 477 ntBASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 AC136759.1-202ENST00000530858 2194 ntBASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP4AQ9BY43 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 Z97180.1-201ENST00000445173 988 ntBASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 POU5F1P2-201ENST00000521750 823 ntBASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC18.68■□□□□ 0.58
CHMP4AQ9BY43 PGAM1P5-201ENST00000548011 764 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms