Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 PRKN-211ENST00000615065 261 ntTSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 AC012508.2-201ENST00000567613 1472 ntBASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 AL360270.3-201ENST00000609118 1348 ntBASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 LINC01749-202ENST00000607802 3408 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 NDUFAB1P1-201ENST00000404262 460 ntBASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 GHSR-202ENST00000427970 912 ntBASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 EMC4-209ENST00000559421 497 ntTSL 2 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 RN7SL713P-201ENST00000582127 302 ntBASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 PPY2P-201ENST00000582808 702 ntBASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 NAT9-222ENST00000583476 583 ntTSL 3 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLIP3Q96DZ5 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
CLIP3Q96DZ5 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.11
CLIP3Q96DZ5 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CLIP3Q96DZ5 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLIP3Q96DZ5 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CLIP3Q96DZ5 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLIP3Q96DZ5 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLIP3Q96DZ5 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLIP3Q96DZ5 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.33□□□□□ -0.11
CLIP3Q96DZ5 REXO1L4P-201ENST00000605109 1937 ntBASIC14.33□□□□□ -0.11
CLIP3Q96DZ5 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLIP3Q96DZ5 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
CLIP3Q96DZ5 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 AL133338.1-201ENST00000565695 1517 ntBASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms