Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC14.22□□□□□ -0.13
COL28A1Q2UY09 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 C2orf69P1-201ENST00000563532 1093 ntBASIC14.22□□□□□ -0.13
COL28A1Q2UY09 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 AL132780.4-201ENST00000624870 1135 ntBASIC14.22□□□□□ -0.13
COL28A1Q2UY09 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 AL136295.7-201ENST00000619226 1200 ntBASIC14.21□□□□□ -0.13
COL28A1Q2UY09 AC007718.1-201ENST00000621078 280 ntBASIC14.21□□□□□ -0.13
COL28A1Q2UY09 AC068587.8-201ENST00000641239 219 ntBASIC14.21□□□□□ -0.13
COL28A1Q2UY09 NAP1L6-202ENST00000641404 1222 ntBASIC14.21□□□□□ -0.13
COL28A1Q2UY09 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL28A1Q2UY09 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL28A1Q2UY09 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL28A1Q2UY09 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL28A1Q2UY09 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
COL28A1Q2UY09 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL28A1Q2UY09 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.14
COL28A1Q2UY09 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 OR2I1P-209ENST00000641730 5365 ntBASIC14.2□□□□□ -0.14
COL28A1Q2UY09 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 RN7SKP214-201ENST00000364208 315 ntBASIC14.2□□□□□ -0.14
COL28A1Q2UY09 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 CHMP1AP1-201ENST00000445563 662 ntBASIC14.2□□□□□ -0.14
COL28A1Q2UY09 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 TUBB8P8-201ENST00000458717 1058 ntBASIC14.2□□□□□ -0.14
COL28A1Q2UY09 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms