Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
ABCA4P78363 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA4P78363 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC12.67□□□□□ -0.38
ABCA4P78363 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC12.67□□□□□ -0.38
ABCA4P78363 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 NDUFS6P1-201ENST00000485187 316 ntBASIC12.67□□□□□ -0.38
ABCA4P78363 GCOM2-201ENST00000509133 1104 ntBASIC12.67□□□□□ -0.38
ABCA4P78363 CCNC-217ENST00000523985 958 ntTSL 2 BASIC12.67□□□□□ -0.38
ABCA4P78363 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
ABCA4P78363 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC12.67□□□□□ -0.38
ABCA4P78363 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA4P78363 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA4P78363 BX088702.1-201ENST00000610784 235 ntBASIC12.67□□□□□ -0.38
ABCA4P78363 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA4P78363 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC12.67□□□□□ -0.38
ABCA4P78363 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ABCA4P78363 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC12.66□□□□□ -0.38
ABCA4P78363 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
ABCA4P78363 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC12.66□□□□□ -0.38
ABCA4P78363 LINC01101-201ENST00000622953 1884 ntBASIC12.66□□□□□ -0.38
ABCA4P78363 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
ABCA4P78363 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC12.66□□□□□ -0.38
ABCA4P78363 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
ABCA4P78363 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 CYP4F23P-201ENST00000593402 1579 ntBASIC12.66□□□□□ -0.38
ABCA4P78363 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC12.66□□□□□ -0.38
ABCA4P78363 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC12.66□□□□□ -0.38
ABCA4P78363 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
ABCA4P78363 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC12.66□□□□□ -0.38
ABCA4P78363 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC12.66□□□□□ -0.38
ABCA4P78363 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC12.66□□□□□ -0.38
ABCA4P78363 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC12.66□□□□□ -0.38
ABCA4P78363 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC12.66□□□□□ -0.38
ABCA4P78363 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC12.66□□□□□ -0.38
ABCA4P78363 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC12.66□□□□□ -0.38
ABCA4P78363 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC12.66□□□□□ -0.38
ABCA4P78363 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC12.66□□□□□ -0.38
ABCA4P78363 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
ABCA4P78363 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC12.66□□□□□ -0.38
ABCA4P78363 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC12.66□□□□□ -0.38
ABCA4P78363 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
ABCA4P78363 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 KRT18P9-201ENST00000604826 1300 ntBASIC12.66□□□□□ -0.38
ABCA4P78363 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ABCA4P78363 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC12.66□□□□□ -0.38
ABCA4P78363 SOD2-202ENST00000367054 815 ntTSL 2 BASIC12.65□□□□□ -0.38
ABCA4P78363 NME2-201ENST00000393183 568 ntTSL 2 BASIC12.65□□□□□ -0.38
ABCA4P78363 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC12.65□□□□□ -0.38
ABCA4P78363 MRPL22P1-201ENST00000505398 616 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC12.65□□□□□ -0.38
ABCA4P78363 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC12.65□□□□□ -0.38
ABCA4P78363 AC100827.2-201ENST00000563214 1194 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 C2orf69P1-201ENST00000563532 1093 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC12.65□□□□□ -0.38
ABCA4P78363 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC12.65□□□□□ -0.38
ABCA4P78363 AC133540.1-201ENST00000620845 1019 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 AC051619.9-201ENST00000623237 597 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC12.65□□□□□ -0.38
ABCA4P78363 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC12.65□□□□□ -0.38
ABCA4P78363 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.65□□□□□ -0.38
ABCA4P78363 LILRP1-201ENST00000444199 1370 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 MROH4P-201ENST00000431302 1578 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
ABCA4P78363 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
ABCA4P78363 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC12.65□□□□□ -0.38
ABCA4P78363 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
ABCA4P78363 LINC01815-202ENST00000641468 1409 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
ABCA4P78363 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC12.65□□□□□ -0.38
ABCA4P78363 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms