Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
APOEP02649 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
APOEP02649 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.48■□□□□ 0.07
APOEP02649 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
APOEP02649 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
APOEP02649 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.48■□□□□ 0.07
APOEP02649 AC079178.1-201ENST00000420915 656 ntBASIC15.48■□□□□ 0.07
APOEP02649 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC15.48■□□□□ 0.07
APOEP02649 Z93015.1-201ENST00000451718 390 ntBASIC15.48■□□□□ 0.07
APOEP02649 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.48■□□□□ 0.07
APOEP02649 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC15.48■□□□□ 0.07
APOEP02649 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC15.48■□□□□ 0.07
APOEP02649 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
APOEP02649 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.48■□□□□ 0.07
APOEP02649 AC113367.3-201ENST00000508316 1912 ntBASIC15.48■□□□□ 0.07
APOEP02649 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.48■□□□□ 0.07
APOEP02649 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC15.48■□□□□ 0.07
APOEP02649 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.48■□□□□ 0.07
APOEP02649 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
APOEP02649 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.47■□□□□ 0.07
APOEP02649 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
APOEP02649 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
APOEP02649 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.47■□□□□ 0.07
APOEP02649 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.47■□□□□ 0.07
APOEP02649 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.47■□□□□ 0.07
APOEP02649 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
APOEP02649 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.47■□□□□ 0.07
APOEP02649 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.47■□□□□ 0.07
APOEP02649 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.47■□□□□ 0.07
APOEP02649 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.47■□□□□ 0.07
APOEP02649 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.47■□□□□ 0.07
APOEP02649 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC15.47■□□□□ 0.07
APOEP02649 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
APOEP02649 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.47■□□□□ 0.07
APOEP02649 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
APOEP02649 AL033527.4-201ENST00000641026 673 ntBASIC15.47■□□□□ 0.07
APOEP02649 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.47■□□□□ 0.07
APOEP02649 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.47■□□□□ 0.07
APOEP02649 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.47■□□□□ 0.07
APOEP02649 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
APOEP02649 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC15.47■□□□□ 0.07
APOEP02649 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
APOEP02649 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
APOEP02649 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.46■□□□□ 0.07
APOEP02649 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
APOEP02649 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.46■□□□□ 0.07
APOEP02649 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15.46■□□□□ 0.07
APOEP02649 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.46■□□□□ 0.07
APOEP02649 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.46■□□□□ 0.07
APOEP02649 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC15.46■□□□□ 0.07
APOEP02649 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC15.46■□□□□ 0.07
APOEP02649 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC15.46■□□□□ 0.07
APOEP02649 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.46■□□□□ 0.07
APOEP02649 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
APOEP02649 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
APOEP02649 AC007274.1-201ENST00000439805 662 ntBASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms