Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AC003102.2-201ENST00000589195 1469 ntBASIC13.29□□□□□ -0.28
SPTA1P02549 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
SPTA1P02549 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 GCK-209ENST00000616242 2260 ntTSL 5 BASIC13.29□□□□□ -0.28
SPTA1P02549 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 AC093826.1-201ENST00000508655 993 ntBASIC13.29□□□□□ -0.28
SPTA1P02549 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
SPTA1P02549 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC13.29□□□□□ -0.28
SPTA1P02549 PSME2-217ENST00000615264 874 ntTSL 5 BASIC13.29□□□□□ -0.28
SPTA1P02549 PSME2-218ENST00000630027 185 ntTSL 3 BASIC13.29□□□□□ -0.28
SPTA1P02549 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SPTA1P02549 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.29□□□□□ -0.28
SPTA1P02549 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
SPTA1P02549 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.28□□□□□ -0.28
SPTA1P02549 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 KLF6-206ENST00000497571 4656 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 AL513523.2-202ENST00000427283 2040 ntBASIC13.28□□□□□ -0.28
SPTA1P02549 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 AL929302.1-201ENST00000426556 871 ntBASIC13.28□□□□□ -0.28
SPTA1P02549 OR2R1P-201ENST00000441404 914 ntBASIC13.28□□□□□ -0.28
SPTA1P02549 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.28□□□□□ -0.28
SPTA1P02549 AC083801.1-201ENST00000491689 358 ntBASIC13.28□□□□□ -0.28
SPTA1P02549 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC13.28□□□□□ -0.28
SPTA1P02549 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC13.28□□□□□ -0.28
SPTA1P02549 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.28□□□□□ -0.28
SPTA1P02549 AC002044.2-201ENST00000624910 970 ntBASIC13.28□□□□□ -0.28
SPTA1P02549 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC13.28□□□□□ -0.28
SPTA1P02549 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC13.28□□□□□ -0.28
SPTA1P02549 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
SPTA1P02549 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
SPTA1P02549 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC13.28□□□□□ -0.28
SPTA1P02549 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
SPTA1P02549 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 AC006504.5-208ENST00000588784 2401 ntBASIC13.28□□□□□ -0.28
SPTA1P02549 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC13.28□□□□□ -0.28
SPTA1P02549 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC13.28□□□□□ -0.28
SPTA1P02549 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC13.28□□□□□ -0.28
SPTA1P02549 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 RNA5SP417-201ENST00000516459 108 ntBASIC13.28□□□□□ -0.28
SPTA1P02549 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 EMC4-208ENST00000559078 599 ntTSL 3 BASIC13.28□□□□□ -0.28
SPTA1P02549 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 MED11-202ENST00000573708 802 ntTSL 2 BASIC13.28□□□□□ -0.28
SPTA1P02549 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC13.28□□□□□ -0.28
SPTA1P02549 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SPTA1P02549 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
SPTA1P02549 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.27□□□□□ -0.28
SPTA1P02549 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.27□□□□□ -0.28
SPTA1P02549 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms