Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CDKL5O76039 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.13■□□□□ 0.33
CDKL5O76039 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.13■□□□□ 0.33
CDKL5O76039 KRT17P8-201ENST00000540749 863 ntBASIC17.13■□□□□ 0.33
CDKL5O76039 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 AC023310.1-201ENST00000554836 735 ntBASIC17.13■□□□□ 0.33
CDKL5O76039 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.13■□□□□ 0.33
CDKL5O76039 PPY2P-201ENST00000582808 702 ntBASIC17.13■□□□□ 0.33
CDKL5O76039 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 AL358472.3-201ENST00000608147 415 ntBASIC17.13■□□□□ 0.33
CDKL5O76039 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC17.13■□□□□ 0.33
CDKL5O76039 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CDKL5O76039 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC17.13■□□□□ 0.33
CDKL5O76039 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
CDKL5O76039 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CDKL5O76039 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
CDKL5O76039 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.13■□□□□ 0.33
CDKL5O76039 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.13■□□□□ 0.33
CDKL5O76039 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CDKL5O76039 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 KRT8P28-201ENST00000433288 1390 ntBASIC17.13■□□□□ 0.33
CDKL5O76039 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC17.13■□□□□ 0.33
CDKL5O76039 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CDKL5O76039 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDKL5O76039 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CDKL5O76039 OS9-204ENST00000389146 2091 ntTSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC17.12■□□□□ 0.33
CDKL5O76039 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.12■□□□□ 0.33
CDKL5O76039 GSN-209ENST00000449733 2702 ntTSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.12■□□□□ 0.33
CDKL5O76039 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.12■□□□□ 0.33
CDKL5O76039 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.12■□□□□ 0.33
CDKL5O76039 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC17.12■□□□□ 0.33
CDKL5O76039 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC17.12■□□□□ 0.33
CDKL5O76039 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.12■□□□□ 0.33
CDKL5O76039 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC17.12■□□□□ 0.33
CDKL5O76039 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
CDKL5O76039 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CDKL5O76039 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC17.12■□□□□ 0.33
CDKL5O76039 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CDKL5O76039 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.12■□□□□ 0.33
CDKL5O76039 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDKL5O76039 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CDKL5O76039 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL5O76039 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL5O76039 TNN-203ENST00000622870 3719 ntTSL 5 BASIC17.11■□□□□ 0.33
CDKL5O76039 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC17.11■□□□□ 0.33
CDKL5O76039 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL5O76039 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL5O76039 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.11■□□□□ 0.33
CDKL5O76039 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC17.11■□□□□ 0.33
CDKL5O76039 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CDKL5O76039 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL5O76039 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL5O76039 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL5O76039 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL5O76039 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC17.11■□□□□ 0.33
CDKL5O76039 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.11■□□□□ 0.33
CDKL5O76039 CNN2P10-201ENST00000443067 918 ntBASIC17.11■□□□□ 0.33
CDKL5O76039 HOMER2P2-201ENST00000451621 847 ntBASIC17.11■□□□□ 0.33
CDKL5O76039 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CDKL5O76039 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC17.11■□□□□ 0.33
CDKL5O76039 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms