Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RPL18-209ENST00000550645 463 ntTSL 5 BASIC14.74□□□□□ -0.05
SHOX2O60902 RPL18-214ENST00000552588 559 ntTSL 3 BASIC14.74□□□□□ -0.05
SHOX2O60902 BANF1P1-201ENST00000553684 263 ntBASIC14.74□□□□□ -0.05
SHOX2O60902 PDPK2P-202ENST00000562415 1191 ntBASIC14.74□□□□□ -0.05
SHOX2O60902 AC145285.3-201ENST00000564603 959 ntBASIC14.74□□□□□ -0.05
SHOX2O60902 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.74□□□□□ -0.05
SHOX2O60902 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.74□□□□□ -0.05
SHOX2O60902 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SHOX2O60902 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC14.74□□□□□ -0.05
SHOX2O60902 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC14.74□□□□□ -0.05
SHOX2O60902 PHB-210ENST00000511832 1509 ntTSL 2 BASIC14.74□□□□□ -0.05
SHOX2O60902 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC14.74□□□□□ -0.05
SHOX2O60902 ESRRB-201ENST00000380887 2745 ntTSL 5 BASIC14.74□□□□□ -0.05
SHOX2O60902 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
SHOX2O60902 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SHOX2O60902 AL031714.1-202ENST00000568106 3107 ntTSL 5 BASIC14.74□□□□□ -0.05
SHOX2O60902 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
SHOX2O60902 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
SHOX2O60902 ZFAND3-203ENST00000373391 3001 ntTSL 5 BASIC14.74□□□□□ -0.05
SHOX2O60902 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SHOX2O60902 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SHOX2O60902 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 CSNK1G1-205ENST00000607537 2083 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
SHOX2O60902 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SHOX2O60902 GRIPAP1-215ENST00000622599 2881 ntTSL 5 BASIC14.73□□□□□ -0.05
SHOX2O60902 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 GOLGA8EP-201ENST00000530246 1959 ntBASIC14.73□□□□□ -0.05
SHOX2O60902 AC027369.3-201ENST00000530465 3707 ntBASIC14.73□□□□□ -0.05
SHOX2O60902 ZDHHC11-201ENST00000283441 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 IGHG1-202ENST00000390548 2619 ntAPPRIS P5 BASIC14.73□□□□□ -0.05
SHOX2O60902 SKP2-209ENST00000620197 3255 ntTSL 2 BASIC14.73□□□□□ -0.05
SHOX2O60902 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.73□□□□□ -0.05
SHOX2O60902 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.73□□□□□ -0.05
SHOX2O60902 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 BEX3-201ENST00000361298 921 ntTSL 2 BASIC14.73□□□□□ -0.05
SHOX2O60902 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
SHOX2O60902 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.73□□□□□ -0.05
SHOX2O60902 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.73□□□□□ -0.05
SHOX2O60902 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.73□□□□□ -0.05
SHOX2O60902 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.73□□□□□ -0.05
SHOX2O60902 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.73□□□□□ -0.05
SHOX2O60902 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC14.73□□□□□ -0.05
SHOX2O60902 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
SHOX2O60902 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.73□□□□□ -0.05
SHOX2O60902 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 DDX12P-201ENST00000432996 2947 ntBASIC14.73□□□□□ -0.05
SHOX2O60902 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
SHOX2O60902 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
SHOX2O60902 TMEM233-201ENST00000426426 3081 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
SHOX2O60902 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.73□□□□□ -0.05
SHOX2O60902 AC005014.1-201ENST00000432006 2976 ntBASIC14.73□□□□□ -0.05
SHOX2O60902 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
SHOX2O60902 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC14.73□□□□□ -0.05
SHOX2O60902 LINC01679-201ENST00000442815 2798 ntTSL 3 BASIC14.73□□□□□ -0.05
SHOX2O60902 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SHOX2O60902 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 ZFYVE27-201ENST00000337540 2927 ntTSL 2 BASIC14.72□□□□□ -0.05
SHOX2O60902 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 DMBT1P1-203ENST00000636837 4628 ntBASIC14.72□□□□□ -0.05
SHOX2O60902 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 SRP54-201ENST00000216774 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC14.72□□□□□ -0.05
SHOX2O60902 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC14.72□□□□□ -0.05
SHOX2O60902 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC14.72□□□□□ -0.05
SHOX2O60902 NDRG4-201ENST00000258187 3324 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC14.72□□□□□ -0.05
SHOX2O60902 RPL13P2-201ENST00000440687 659 ntBASIC14.72□□□□□ -0.05
SHOX2O60902 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHOX2O60902 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.72□□□□□ -0.05
SHOX2O60902 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC14.72□□□□□ -0.05
SHOX2O60902 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC14.72□□□□□ -0.05
SHOX2O60902 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms