Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AC027601.5-201ENST00000624065 2482 ntBASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 AL355994.2-201ENST00000447882 704 ntBASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 GPR53P-205ENST00000457298 1084 ntBASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 HILS1-202ENST00000545329 423 ntBASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 AC023310.1-201ENST00000554836 735 ntBASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
AP4E1Q9UPM8 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 AC152010.1-201ENST00000415779 2006 ntBASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 HSPA7-201ENST00000445535 1927 ntBASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 CHMP1AP1-201ENST00000445563 662 ntBASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 HOMER2P2-201ENST00000451621 847 ntBASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 RN7SL832P-201ENST00000607781 1756 ntBASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 MIR6775-201ENST00000617557 69 ntBASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 AC008687.7-202ENST00000637404 953 ntBASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 GSN-209ENST00000449733 2702 ntTSL 2 BASIC15.3■□□□□ 0.04
AP4E1Q9UPM8 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP4E1Q9UPM8 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP4E1Q9UPM8 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.29■□□□□ 0.04
AP4E1Q9UPM8 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP4E1Q9UPM8 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
AP4E1Q9UPM8 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP4E1Q9UPM8 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.29■□□□□ 0.04
AP4E1Q9UPM8 AC090505.1-201ENST00000430515 1834 ntBASIC15.29■□□□□ 0.04
AP4E1Q9UPM8 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
AP4E1Q9UPM8 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP4E1Q9UPM8 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP4E1Q9UPM8 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms