Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 AC011498.7-201ENST00000624986 2027 ntBASIC18.9■□□□□ 0.62
SMC4Q9NTJ3 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC18.89■□□□□ 0.62
SMC4Q9NTJ3 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
SMC4Q9NTJ3 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SMC4Q9NTJ3 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 RN7SL832P-201ENST00000607781 1756 ntBASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 YBX1P6-201ENST00000442962 1002 ntBASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 BNIP3P42-201ENST00000454982 569 ntBASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 BNIP3P29-201ENST00000598302 571 ntBASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 AC011447.5-201ENST00000616168 564 ntBASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 E2F3P2-201ENST00000447755 1422 ntBASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SMC4Q9NTJ3 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 ABR-228ENST00000574437 3196 ntTSL 5 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 R3HDM2P2-201ENST00000401880 2116 ntBASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 TISP43-201ENST00000409793 538 ntTSL 4 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 AC100850.1-201ENST00000506768 649 ntBASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 AC009542.2-202ENST00000619004 1067 ntBASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SMC4Q9NTJ3 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms