Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC106785.2-201ENST00000564385 1319 ntBASIC12.52□□□□□ -0.4
COL12A1Q99715 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL12A1Q99715 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL12A1Q99715 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL12A1Q99715 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC12.52□□□□□ -0.4
COL12A1Q99715 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.4
COL12A1Q99715 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC12.52□□□□□ -0.4
COL12A1Q99715 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL12A1Q99715 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL12A1Q99715 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL12A1Q99715 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC12.52□□□□□ -0.4
COL12A1Q99715 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL12A1Q99715 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC12.52□□□□□ -0.4
COL12A1Q99715 RN7SL277P-201ENST00000481521 288 ntBASIC12.52□□□□□ -0.4
COL12A1Q99715 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC12.52□□□□□ -0.4
COL12A1Q99715 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL12A1Q99715 NT5C-204ENST00000578337 582 ntTSL 2 BASIC12.52□□□□□ -0.4
COL12A1Q99715 CLPP-205ENST00000596605 646 ntTSL 2 BASIC12.52□□□□□ -0.4
COL12A1Q99715 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC12.52□□□□□ -0.4
COL12A1Q99715 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC12.52□□□□□ -0.4
COL12A1Q99715 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC12.52□□□□□ -0.4
COL12A1Q99715 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC12.52□□□□□ -0.4
COL12A1Q99715 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC12.52□□□□□ -0.4
COL12A1Q99715 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL12A1Q99715 PXK-210ENST00000479241 2817 ntTSL 2 BASIC12.52□□□□□ -0.4
COL12A1Q99715 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.52□□□□□ -0.41
COL12A1Q99715 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
COL12A1Q99715 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL12A1Q99715 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL12A1Q99715 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC12.52□□□□□ -0.41
COL12A1Q99715 AC005014.1-201ENST00000432006 2976 ntBASIC12.52□□□□□ -0.41
COL12A1Q99715 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL12A1Q99715 AL603832.2-201ENST00000566195 2125 ntBASIC12.52□□□□□ -0.41
COL12A1Q99715 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL12A1Q99715 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL12A1Q99715 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL12A1Q99715 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
COL12A1Q99715 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC12.52□□□□□ -0.41
COL12A1Q99715 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC12.52□□□□□ -0.41
COL12A1Q99715 PCP2-202ENST00000598935 457 ntAPPRIS ALT2 TSL 3 BASIC12.52□□□□□ -0.41
COL12A1Q99715 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC12.52□□□□□ -0.41
COL12A1Q99715 AC113385.2-201ENST00000614465 762 ntBASIC12.52□□□□□ -0.41
COL12A1Q99715 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL12A1Q99715 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL12A1Q99715 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL12A1Q99715 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
COL12A1Q99715 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
COL12A1Q99715 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
COL12A1Q99715 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC12.51□□□□□ -0.41
COL12A1Q99715 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC12.51□□□□□ -0.41
COL12A1Q99715 DNM1P48-201ENST00000419538 439 ntBASIC12.51□□□□□ -0.41
COL12A1Q99715 AC131235.2-201ENST00000445553 1057 ntBASIC12.51□□□□□ -0.41
COL12A1Q99715 RN7SL87P-201ENST00000497657 288 ntBASIC12.51□□□□□ -0.41
COL12A1Q99715 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC12.51□□□□□ -0.41
COL12A1Q99715 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 NAA40-205ENST00000539656 577 ntTSL 4 BASIC12.51□□□□□ -0.41
COL12A1Q99715 MST1L-204ENST00000545160 559 ntTSL 4 BASIC12.51□□□□□ -0.41
COL12A1Q99715 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC12.51□□□□□ -0.41
COL12A1Q99715 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC12.51□□□□□ -0.41
COL12A1Q99715 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC12.51□□□□□ -0.41
COL12A1Q99715 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
COL12A1Q99715 AC012370.2-204ENST00000601940 1320 ntTSL 5 BASIC12.51□□□□□ -0.41
COL12A1Q99715 RPL13AP3-202ENST00000494676 1473 ntBASIC12.51□□□□□ -0.41
COL12A1Q99715 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
COL12A1Q99715 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC12.51□□□□□ -0.41
COL12A1Q99715 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC12.51□□□□□ -0.41
COL12A1Q99715 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC12.51□□□□□ -0.41
COL12A1Q99715 TPT1P11-201ENST00000458482 498 ntBASIC12.51□□□□□ -0.41
COL12A1Q99715 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC12.51□□□□□ -0.41
COL12A1Q99715 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
COL12A1Q99715 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
COL12A1Q99715 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC12.51□□□□□ -0.41
COL12A1Q99715 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
COL12A1Q99715 AL365181.3-201ENST00000605886 3222 ntBASIC12.51□□□□□ -0.41
COL12A1Q99715 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC12.51□□□□□ -0.41
COL12A1Q99715 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC12.51□□□□□ -0.41
COL12A1Q99715 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
COL12A1Q99715 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC12.51□□□□□ -0.41
COL12A1Q99715 AC087203.1-201ENST00000532111 1181 ntBASIC12.51□□□□□ -0.41
COL12A1Q99715 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL12A1Q99715 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms