Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP88Q99567 TLE1P1-201ENST00000422965 589 ntBASIC17.26■□□□□ 0.35
NUP88Q99567 TUBB8P8-201ENST00000458717 1058 ntBASIC17.26■□□□□ 0.35
NUP88Q99567 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC17.26■□□□□ 0.35
NUP88Q99567 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NUP88Q99567 CSH2-206ENST00000560142 749 ntTSL 5 BASIC17.26■□□□□ 0.35
NUP88Q99567 ARL16-210ENST00000574938 751 ntTSL 2 BASIC17.26■□□□□ 0.35
NUP88Q99567 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
NUP88Q99567 RN7SL774P-201ENST00000577467 290 ntBASIC17.26■□□□□ 0.35
NUP88Q99567 RN7SL163P-201ENST00000583100 276 ntBASIC17.26■□□□□ 0.35
NUP88Q99567 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP88Q99567 AC026740.1-201ENST00000607068 791 ntBASIC17.26■□□□□ 0.35
NUP88Q99567 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC17.26■□□□□ 0.35
NUP88Q99567 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC17.26■□□□□ 0.35
NUP88Q99567 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.26■□□□□ 0.35
NUP88Q99567 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC17.26■□□□□ 0.35
NUP88Q99567 LINC00528-201ENST00000600723 2160 ntBASIC17.26■□□□□ 0.35
NUP88Q99567 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.26■□□□□ 0.35
NUP88Q99567 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP88Q99567 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP88Q99567 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
NUP88Q99567 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NUP88Q99567 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.26■□□□□ 0.35
NUP88Q99567 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
NUP88Q99567 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.26■□□□□ 0.35
NUP88Q99567 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP88Q99567 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC17.26■□□□□ 0.35
NUP88Q99567 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP88Q99567 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 MBLAC2-202ENST00000514906 1936 ntBASIC17.25■□□□□ 0.35
NUP88Q99567 AMT-239ENST00000636865 1914 ntTSL 5 BASIC17.25■□□□□ 0.35
NUP88Q99567 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.25■□□□□ 0.35
NUP88Q99567 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC17.25■□□□□ 0.35
NUP88Q99567 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
NUP88Q99567 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
NUP88Q99567 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
NUP88Q99567 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
NUP88Q99567 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC17.25■□□□□ 0.35
NUP88Q99567 RN7SL11P-201ENST00000471305 293 ntBASIC17.25■□□□□ 0.35
NUP88Q99567 AC106794.1-201ENST00000506935 792 ntBASIC17.25■□□□□ 0.35
NUP88Q99567 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC17.25■□□□□ 0.35
NUP88Q99567 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC17.25■□□□□ 0.35
NUP88Q99567 AC131206.1-201ENST00000538078 1211 ntBASIC17.25■□□□□ 0.35
NUP88Q99567 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC17.25■□□□□ 0.35
NUP88Q99567 AC105129.2-201ENST00000559536 390 ntBASIC17.25■□□□□ 0.35
NUP88Q99567 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.25■□□□□ 0.35
NUP88Q99567 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC17.25■□□□□ 0.35
NUP88Q99567 AC097724.1-201ENST00000609581 426 ntBASIC17.25■□□□□ 0.35
NUP88Q99567 AC090164.2-201ENST00000611487 516 ntBASIC17.25■□□□□ 0.35
NUP88Q99567 AP001505.2-201ENST00000616815 443 ntBASIC17.25■□□□□ 0.35
NUP88Q99567 AC138627.1-207ENST00000641560 1006 ntBASIC17.25■□□□□ 0.35
NUP88Q99567 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.25■□□□□ 0.35
NUP88Q99567 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
NUP88Q99567 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC17.25■□□□□ 0.35
NUP88Q99567 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
NUP88Q99567 SBF1P1-201ENST00000444527 5631 ntBASIC17.25■□□□□ 0.35
NUP88Q99567 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.25■□□□□ 0.35
NUP88Q99567 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP88Q99567 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.25■□□□□ 0.35
NUP88Q99567 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
NUP88Q99567 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.24■□□□□ 0.35
NUP88Q99567 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP88Q99567 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP88Q99567 AC023908.3-201ENST00000564211 3047 ntBASIC17.24■□□□□ 0.35
NUP88Q99567 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP88Q99567 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.24■□□□□ 0.35
NUP88Q99567 SNX18-202ENST00000343017 3140 ntBASIC17.24■□□□□ 0.35
NUP88Q99567 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC17.24■□□□□ 0.35
NUP88Q99567 ZBED1P1-201ENST00000502364 1930 ntBASIC17.24■□□□□ 0.35
NUP88Q99567 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP88Q99567 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NUP88Q99567 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NUP88Q99567 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
NUP88Q99567 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
NUP88Q99567 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC17.24■□□□□ 0.35
NUP88Q99567 AL662890.1-201ENST00000396818 632 ntBASIC17.24■□□□□ 0.35
NUP88Q99567 CICP12-201ENST00000455801 843 ntBASIC17.24■□□□□ 0.35
NUP88Q99567 OARD1-204ENST00000464633 717 ntTSL 2 BASIC17.24■□□□□ 0.35
NUP88Q99567 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC17.24■□□□□ 0.35
NUP88Q99567 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC17.24■□□□□ 0.35
NUP88Q99567 GCOM2-201ENST00000509133 1104 ntBASIC17.24■□□□□ 0.35
NUP88Q99567 RNA5SP423-201ENST00000517127 109 ntBASIC17.24■□□□□ 0.35
NUP88Q99567 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC17.24■□□□□ 0.35
NUP88Q99567 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
NUP88Q99567 AC005962.1-201ENST00000584100 773 ntBASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms