Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 AL008638.4-201ENST00000624792 1315 ntBASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 RNVU1-8-201ENST00000364272 125 ntBASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 AL121949.3-201ENST00000406684 385 ntBASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 AC023968.2-201ENST00000560593 1049 ntBASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.27■□□□□ 0.36
SMC1BQ8NDV3 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 PCDHA1-201ENST00000378133 2726 ntBASIC17.27■□□□□ 0.35
SMC1BQ8NDV3 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 SNORA57-201ENST00000383870 149 ntBASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 KRT18P4-201ENST00000422599 1288 ntBASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 SCARNA12-201ENST00000459155 270 ntBASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 RN7SL277P-201ENST00000481521 288 ntBASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 RPS18P9-201ENST00000482817 460 ntBASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 RN7SL767P-201ENST00000493013 295 ntBASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 RPS23-207ENST00000511844 530 ntTSL 2 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 FKBP4P8-201ENST00000610931 1369 ntBASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 LINC02199-201ENST00000506655 2702 ntBASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SMC1BQ8NDV3 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 AC092171.3-201ENST00000610122 2651 ntBASIC17.25■□□□□ 0.35
SMC1BQ8NDV3 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms