Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 AC093826.1-201ENST00000508655 993 ntBASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 F11R-204ENST00000537746 1245 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 CYP4F36P-201ENST00000589193 186 ntBASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 AL133467.4-201ENST00000602953 725 ntBASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 AC011462.4-201ENST00000616866 449 ntBASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC88AQ3V6T2 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 AC006372.4-201ENST00000624122 1543 ntBASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 AC015688.4-201ENST00000580780 1647 ntBASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 BRD7P5-201ENST00000299197 1822 ntBASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 AC063952.3-201ENST00000467756 308 ntBASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 RN7SL564P-201ENST00000496309 250 ntBASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 TP53-221ENST00000615910 1149 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 AC020904.3-201ENST00000624199 442 ntBASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CCDC88AQ3V6T2 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 POR-201ENST00000394893 2532 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 FUCA1P1-201ENST00000374476 1351 ntBASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 NME6-208ENST00000435684 599 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 KLF17P1-201ENST00000547105 1126 ntBASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 HYMAI-201ENST00000635591 3347 ntBASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 MX1-218ENST00000619682 1980 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 AC009093.10-201ENST00000641956 1442 ntBASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC88AQ3V6T2 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 149.2 ms