Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLRN1P58418 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.23□□□□□ -0.29
CLRN1P58418 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLRN1P58418 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLRN1P58418 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLRN1P58418 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLRN1P58418 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLRN1P58418 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLRN1P58418 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLRN1P58418 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.23□□□□□ -0.29
CLRN1P58418 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLRN1P58418 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
CLRN1P58418 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC13.22□□□□□ -0.29
CLRN1P58418 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.22□□□□□ -0.29
CLRN1P58418 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.22□□□□□ -0.29
CLRN1P58418 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
CLRN1P58418 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
CLRN1P58418 RN7SKP230-201ENST00000365642 335 ntBASIC13.22□□□□□ -0.29
CLRN1P58418 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
CLRN1P58418 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC13.22□□□□□ -0.29
CLRN1P58418 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.22□□□□□ -0.29
CLRN1P58418 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.22□□□□□ -0.29
CLRN1P58418 USP32P1-208ENST00000506594 1164 ntBASIC13.22□□□□□ -0.29
CLRN1P58418 FUZ-207ENST00000526575 482 ntTSL 4 BASIC13.22□□□□□ -0.29
CLRN1P58418 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CLRN1P58418 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
CLRN1P58418 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC13.22□□□□□ -0.29
CLRN1P58418 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13.22□□□□□ -0.29
CLRN1P58418 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.22□□□□□ -0.29
CLRN1P58418 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
CLRN1P58418 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.22□□□□□ -0.29
CLRN1P58418 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.22□□□□□ -0.29
CLRN1P58418 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.22□□□□□ -0.29
CLRN1P58418 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 AC020910.5-201ENST00000623668 1865 ntBASIC13.22□□□□□ -0.29
CLRN1P58418 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
CLRN1P58418 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CLRN1P58418 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
CLRN1P58418 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC13.22□□□□□ -0.29
CLRN1P58418 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLRN1P58418 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.29
CLRN1P58418 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
CLRN1P58418 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.21□□□□□ -0.29
CLRN1P58418 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.21□□□□□ -0.29
CLRN1P58418 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 AC015688.4-201ENST00000580780 1647 ntBASIC13.21□□□□□ -0.29
CLRN1P58418 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.21□□□□□ -0.29
CLRN1P58418 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
CLRN1P58418 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CLRN1P58418 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLRN1P58418 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
CLRN1P58418 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.21□□□□□ -0.29
CLRN1P58418 TMEM14DP-201ENST00000422205 345 ntBASIC13.21□□□□□ -0.29
CLRN1P58418 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC13.21□□□□□ -0.29
CLRN1P58418 KRT43P-201ENST00000434019 910 ntBASIC13.21□□□□□ -0.29
CLRN1P58418 AC016694.1-201ENST00000434179 700 ntBASIC13.21□□□□□ -0.29
CLRN1P58418 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
CLRN1P58418 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.21□□□□□ -0.29
CLRN1P58418 FTH1P14-201ENST00000482930 551 ntBASIC13.21□□□□□ -0.29
CLRN1P58418 GCOM2-201ENST00000509133 1104 ntBASIC13.21□□□□□ -0.29
CLRN1P58418 RNA5SP486-201ENST00000515961 83 ntBASIC13.21□□□□□ -0.29
CLRN1P58418 GNRHR2-203ENST00000581100 1187 ntBASIC13.21□□□□□ -0.29
CLRN1P58418 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.21□□□□□ -0.29
CLRN1P58418 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms