Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.9□□□□□ -0.02
PTPN4P29074 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.9□□□□□ -0.02
PTPN4P29074 AC136604.1-201ENST00000418535 575 ntBASIC14.9□□□□□ -0.02
PTPN4P29074 AL442647.2-201ENST00000429864 857 ntBASIC14.9□□□□□ -0.02
PTPN4P29074 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PTPN4P29074 TARDBPP1-201ENST00000442013 1203 ntBASIC14.9□□□□□ -0.02
PTPN4P29074 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.9□□□□□ -0.02
PTPN4P29074 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.9□□□□□ -0.02
PTPN4P29074 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.9□□□□□ -0.02
PTPN4P29074 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.9□□□□□ -0.02
PTPN4P29074 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.9□□□□□ -0.02
PTPN4P29074 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.9□□□□□ -0.02
PTPN4P29074 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.9□□□□□ -0.02
PTPN4P29074 AC008735.3-201ENST00000596646 500 ntBASIC14.9□□□□□ -0.02
PTPN4P29074 Six3os1_5.1-201ENST00000611000 271 ntBASIC14.9□□□□□ -0.02
PTPN4P29074 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.9□□□□□ -0.02
PTPN4P29074 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.9□□□□□ -0.02
PTPN4P29074 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.9□□□□□ -0.02
PTPN4P29074 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PTPN4P29074 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
PTPN4P29074 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 KRT8P22-201ENST00000562317 1415 ntBASIC14.9□□□□□ -0.02
PTPN4P29074 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PTPN4P29074 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
PTPN4P29074 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
PTPN4P29074 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN4P29074 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN4P29074 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN4P29074 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN4P29074 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN4P29074 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
PTPN4P29074 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.89□□□□□ -0.03
PTPN4P29074 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.89□□□□□ -0.03
PTPN4P29074 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.89□□□□□ -0.03
PTPN4P29074 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
PTPN4P29074 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC14.89□□□□□ -0.03
PTPN4P29074 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN4P29074 AC010319.3-201ENST00000597028 470 ntBASIC14.89□□□□□ -0.03
PTPN4P29074 AC133539.2-201ENST00000604757 467 ntBASIC14.89□□□□□ -0.03
PTPN4P29074 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN4P29074 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN4P29074 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN4P29074 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN4P29074 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
PTPN4P29074 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 CR383656.2-201ENST00000548656 2254 ntBASIC14.89□□□□□ -0.03
PTPN4P29074 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN4P29074 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN4P29074 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
PTPN4P29074 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms