Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 SERPINA13P-202ENST00000478994 924 ntBASIC14.86□□□□□ -0.03
DKK3Q9UBP4 AC021723.1-201ENST00000486306 515 ntBASIC14.86□□□□□ -0.03
DKK3Q9UBP4 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 NKG7-204ENST00000595217 816 ntTSL 2 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 AC022748.3-201ENST00000621828 275 ntBASIC14.86□□□□□ -0.03
DKK3Q9UBP4 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 AC126335.2-201ENST00000623362 4637 ntBASIC14.86□□□□□ -0.03
DKK3Q9UBP4 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 CSH2-202ENST00000345366 598 ntTSL 5 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.85□□□□□ -0.03
DKK3Q9UBP4 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 AC012441.2-201ENST00000444843 739 ntBASIC14.85□□□□□ -0.03
DKK3Q9UBP4 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 BNIP3P13-201ENST00000599968 566 ntBASIC14.85□□□□□ -0.03
DKK3Q9UBP4 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 AL590440.2-201ENST00000641973 1595 ntBASIC14.85□□□□□ -0.03
DKK3Q9UBP4 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
DKK3Q9UBP4 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
DKK3Q9UBP4 OR2I1P-210ENST00000642037 4691 ntBASIC14.84□□□□□ -0.03
DKK3Q9UBP4 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
DKK3Q9UBP4 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
DKK3Q9UBP4 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
DKK3Q9UBP4 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
DKK3Q9UBP4 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
DKK3Q9UBP4 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.84□□□□□ -0.03
DKK3Q9UBP4 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
DKK3Q9UBP4 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
DKK3Q9UBP4 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.84□□□□□ -0.03
DKK3Q9UBP4 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
DKK3Q9UBP4 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms