Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 MRPL37P1-201ENST00000592451 1337 ntBASIC17.66■□□□□ 0.42
UPF3BQ9BZI7 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 AC215219.1-201ENST00000400706 1817 ntBASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 AC009093.2-202ENST00000620513 2079 ntBASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 BAATP1-201ENST00000412284 1225 ntBASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 AL391280.1-201ENST00000506969 1062 ntBASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 GCOM2-201ENST00000509133 1104 ntBASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 HILS1-202ENST00000545329 423 ntBASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 AC010319.3-201ENST00000597028 470 ntBASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 MST1P2-201ENST00000457982 2291 ntBASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
UPF3BQ9BZI7 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC17.64■□□□□ 0.42
UPF3BQ9BZI7 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC17.64■□□□□ 0.42
UPF3BQ9BZI7 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
UPF3BQ9BZI7 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.64■□□□□ 0.42
UPF3BQ9BZI7 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC17.64■□□□□ 0.42
UPF3BQ9BZI7 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 AC011474.4-201ENST00000623523 2076 ntBASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 TDH-203ENST00000531764 1110 ntBASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 NOP2-211ENST00000540228 668 ntTSL 2 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 MIR6805-201ENST00000615055 62 ntBASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 TK2-221ENST00000620035 5060 ntTSL 2 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
UPF3BQ9BZI7 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 152.2 ms