Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 AL157791.1-201ENST00000553667 1699 ntBASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC3Q9BQI4 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 ZBED1P1-201ENST00000502364 1930 ntBASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 FAM58BP-201ENST00000439056 645 ntBASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 MIR3907-201ENST00000579424 151 ntBASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 AL138725.1-201ENST00000407347 1314 ntBASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC3Q9BQI4 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 AC007274.2-201ENST00000421675 662 ntBASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 PUDPP3-201ENST00000445368 636 ntBASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 MAGEA5-201ENST00000446757 942 ntBASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CCDC3Q9BQI4 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms