Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC12.54□□□□□ -0.4
COL12A1Q99715 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL12A1Q99715 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL12A1Q99715 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.54□□□□□ -0.4
COL12A1Q99715 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL12A1Q99715 STRN-202ENST00000379213 2254 ntTSL 5 BASIC12.54□□□□□ -0.4
COL12A1Q99715 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL12A1Q99715 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC12.54□□□□□ -0.4
COL12A1Q99715 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC12.54□□□□□ -0.4
COL12A1Q99715 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL12A1Q99715 ACY3-202ENST00000529256 933 ntTSL 3 BASIC12.54□□□□□ -0.4
COL12A1Q99715 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC12.54□□□□□ -0.4
COL12A1Q99715 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC12.54□□□□□ -0.4
COL12A1Q99715 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC12.54□□□□□ -0.4
COL12A1Q99715 AC120498.7-201ENST00000562876 330 ntBASIC12.54□□□□□ -0.4
COL12A1Q99715 PCDHA1-201ENST00000378133 2726 ntBASIC12.54□□□□□ -0.4
COL12A1Q99715 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC12.54□□□□□ -0.4
COL12A1Q99715 KRT8P28-201ENST00000433288 1390 ntBASIC12.54□□□□□ -0.4
COL12A1Q99715 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC12.54□□□□□ -0.4
COL12A1Q99715 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL12A1Q99715 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
COL12A1Q99715 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
COL12A1Q99715 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC12.54□□□□□ -0.4
COL12A1Q99715 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL12A1Q99715 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC12.53□□□□□ -0.4
COL12A1Q99715 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC12.53□□□□□ -0.4
COL12A1Q99715 AL359092.2-201ENST00000423330 585 ntBASIC12.53□□□□□ -0.4
COL12A1Q99715 AC008026.2-201ENST00000495438 348 ntBASIC12.53□□□□□ -0.4
COL12A1Q99715 AC106782.5-201ENST00000616011 337 ntBASIC12.53□□□□□ -0.4
COL12A1Q99715 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC12.53□□□□□ -0.4
COL12A1Q99715 LINC00244-201ENST00000625073 613 ntBASIC12.53□□□□□ -0.4
COL12A1Q99715 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.53□□□□□ -0.4
COL12A1Q99715 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.53□□□□□ -0.4
COL12A1Q99715 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC12.53□□□□□ -0.4
COL12A1Q99715 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC12.53□□□□□ -0.4
COL12A1Q99715 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
COL12A1Q99715 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC12.53□□□□□ -0.4
COL12A1Q99715 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC12.53□□□□□ -0.4
COL12A1Q99715 AC079325.1-201ENST00000430386 857 ntBASIC12.53□□□□□ -0.4
COL12A1Q99715 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC12.53□□□□□ -0.4
COL12A1Q99715 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC12.53□□□□□ -0.4
COL12A1Q99715 KRT8P34-201ENST00000577607 1044 ntBASIC12.53□□□□□ -0.4
COL12A1Q99715 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC12.53□□□□□ -0.4
COL12A1Q99715 SIGLEC22P-201ENST00000599104 714 ntBASIC12.53□□□□□ -0.4
COL12A1Q99715 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC12.53□□□□□ -0.4
COL12A1Q99715 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
COL12A1Q99715 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC12.53□□□□□ -0.4
COL12A1Q99715 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC12.53□□□□□ -0.4
COL12A1Q99715 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC12.53□□□□□ -0.4
COL12A1Q99715 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC12.53□□□□□ -0.4
COL12A1Q99715 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
COL12A1Q99715 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC12.53□□□□□ -0.4
COL12A1Q99715 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC12.53□□□□□ -0.4
COL12A1Q99715 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC12.53□□□□□ -0.4
COL12A1Q99715 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC12.53□□□□□ -0.4
COL12A1Q99715 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC12.53□□□□□ -0.4
COL12A1Q99715 GAS7-216ENST00000583882 553 ntTSL 5 BASIC12.53□□□□□ -0.4
COL12A1Q99715 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC12.53□□□□□ -0.4
COL12A1Q99715 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC12.53□□□□□ -0.4
COL12A1Q99715 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
COL12A1Q99715 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL12A1Q99715 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC12.52□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms