Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
USP54Q70EL1 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.93■□□□□ 0.62
USP54Q70EL1 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
USP54Q70EL1 USP35-204ENST00000530267 2419 ntTSL 2 BASIC18.93■□□□□ 0.62
USP54Q70EL1 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP54Q70EL1 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
USP54Q70EL1 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC18.92■□□□□ 0.62
USP54Q70EL1 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC18.92■□□□□ 0.62
USP54Q70EL1 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
USP54Q70EL1 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC18.92■□□□□ 0.62
USP54Q70EL1 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 PTGER4P2-201ENST00000328411 252 ntBASIC18.92■□□□□ 0.62
USP54Q70EL1 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC18.92■□□□□ 0.62
USP54Q70EL1 AL512599.1-201ENST00000430724 685 ntBASIC18.92■□□□□ 0.62
USP54Q70EL1 HNRNPA1P2-207ENST00000432375 960 ntBASIC18.92■□□□□ 0.62
USP54Q70EL1 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC18.92■□□□□ 0.62
USP54Q70EL1 PTGER4P3-201ENST00000458150 252 ntBASIC18.92■□□□□ 0.62
USP54Q70EL1 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 APOC1-209ENST00000592885 562 ntTSL 3 BASIC18.92■□□□□ 0.62
USP54Q70EL1 COQ4-204ENST00000608951 781 ntTSL 2 BASIC18.92■□□□□ 0.62
USP54Q70EL1 HMGB1P24-201ENST00000611897 328 ntBASIC18.92■□□□□ 0.62
USP54Q70EL1 AC113367.3-201ENST00000508316 1912 ntBASIC18.92■□□□□ 0.62
USP54Q70EL1 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC18.92■□□□□ 0.62
USP54Q70EL1 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.92■□□□□ 0.62
USP54Q70EL1 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
USP54Q70EL1 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
USP54Q70EL1 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC18.92■□□□□ 0.62
USP54Q70EL1 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
USP54Q70EL1 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC18.92■□□□□ 0.62
USP54Q70EL1 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.92■□□□□ 0.62
USP54Q70EL1 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
USP54Q70EL1 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC18.92■□□□□ 0.62
USP54Q70EL1 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC18.92■□□□□ 0.62
USP54Q70EL1 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC18.92■□□□□ 0.62
USP54Q70EL1 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC18.92■□□□□ 0.62
USP54Q70EL1 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC18.92■□□□□ 0.62
USP54Q70EL1 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC18.92■□□□□ 0.62
USP54Q70EL1 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC18.92■□□□□ 0.62
USP54Q70EL1 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
USP54Q70EL1 BAP1-211ENST00000615113 489 ntBASIC18.92■□□□□ 0.62
USP54Q70EL1 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP54Q70EL1 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC18.91■□□□□ 0.62
USP54Q70EL1 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC18.91■□□□□ 0.62
USP54Q70EL1 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP54Q70EL1 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
USP54Q70EL1 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP54Q70EL1 CICP24-201ENST00000605464 2705 ntBASIC18.91■□□□□ 0.62
USP54Q70EL1 AC020910.6-201ENST00000623084 1459 ntBASIC18.91■□□□□ 0.62
USP54Q70EL1 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP54Q70EL1 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP54Q70EL1 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP54Q70EL1 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP54Q70EL1 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP54Q70EL1 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP54Q70EL1 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
USP54Q70EL1 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP54Q70EL1 ACTBP14-201ENST00000411655 1089 ntBASIC18.91■□□□□ 0.62
USP54Q70EL1 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC18.91■□□□□ 0.62
USP54Q70EL1 RN7SL147P-201ENST00000487345 298 ntBASIC18.91■□□□□ 0.62
USP54Q70EL1 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC18.91■□□□□ 0.62
USP54Q70EL1 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC18.91■□□□□ 0.62
USP54Q70EL1 SRP14-204ENST00000558720 780 ntTSL 2 BASIC18.91■□□□□ 0.62
USP54Q70EL1 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
USP54Q70EL1 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC18.91■□□□□ 0.62
USP54Q70EL1 PEBP1P2-201ENST00000603980 558 ntBASIC18.91■□□□□ 0.62
USP54Q70EL1 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC18.91■□□□□ 0.62
USP54Q70EL1 AC092115.1-201ENST00000566277 1402 ntBASIC18.91■□□□□ 0.62
USP54Q70EL1 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
USP54Q70EL1 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP54Q70EL1 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC18.91■□□□□ 0.62
USP54Q70EL1 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP54Q70EL1 LINC00554-201ENST00000564841 3011 ntBASIC18.9■□□□□ 0.62
USP54Q70EL1 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms