Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 DEF8-202ENST00000418391 852 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 KRTAP19-9P-201ENST00000421795 191 ntBASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 UPF3AP2-201ENST00000457924 1132 ntBASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 TSACC-208ENST00000481479 741 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 AC106820.3-201ENST00000561653 397 ntBASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 AC005730.2-201ENST00000564549 1184 ntBASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 AP001002.3-201ENST00000623482 206 ntBASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 AC138627.1-207ENST00000641560 1006 ntBASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC144BQ3MJ40 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
CCDC144BQ3MJ40 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 CYP46A4P-201ENST00000414953 267 ntBASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 CHMP1AP1-201ENST00000445563 662 ntBASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 HIST2H2BB-201ENST00000449108 381 ntBASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 AC100850.1-201ENST00000506768 649 ntBASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 AC016629.1-201ENST00000596579 586 ntBASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 AC138649.2-201ENST00000615886 705 ntBASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 AC055811.4-201ENST00000624039 1754 ntBASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC144BQ3MJ40 BEND3P1-201ENST00000421591 1944 ntBASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 TNN-203ENST00000622870 3719 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 CHMP4BP1-201ENST00000556017 588 ntBASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 COG4-212ENST00000564653 590 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 AC015967.2-201ENST00000624092 234 ntBASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 AC006435.4-201ENST00000625037 234 ntBASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 AL356737.1-201ENST00000634391 234 ntBASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 AL603764.1-201ENST00000636452 321 ntBASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC144BQ3MJ40 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms