Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL5A3P25940 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A3P25940 AC004554.1-201ENST00000422830 1468 ntBASIC17.93■□□□□ 0.46
COL5A3P25940 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC17.93■□□□□ 0.46
COL5A3P25940 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
COL5A3P25940 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A3P25940 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
COL5A3P25940 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A3P25940 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A3P25940 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A3P25940 OR2W2P-201ENST00000406313 909 ntBASIC17.92■□□□□ 0.46
COL5A3P25940 FAM21EP-201ENST00000417804 985 ntBASIC17.92■□□□□ 0.46
COL5A3P25940 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A3P25940 TPT1P11-201ENST00000458482 498 ntBASIC17.92■□□□□ 0.46
COL5A3P25940 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC17.92■□□□□ 0.46
COL5A3P25940 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A3P25940 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A3P25940 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A3P25940 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A3P25940 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC17.92■□□□□ 0.46
COL5A3P25940 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A3P25940 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A3P25940 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A3P25940 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.92■□□□□ 0.46
COL5A3P25940 HPD-204ENST00000543163 1709 ntTSL 5 BASIC17.92■□□□□ 0.46
COL5A3P25940 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC17.92■□□□□ 0.46
COL5A3P25940 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A3P25940 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A3P25940 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
COL5A3P25940 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
COL5A3P25940 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A3P25940 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC17.92■□□□□ 0.46
COL5A3P25940 SSR4-202ENST00000370085 526 ntTSL 2 BASIC17.92■□□□□ 0.46
COL5A3P25940 HNRNPA1P58-201ENST00000403629 610 ntBASIC17.92■□□□□ 0.46
COL5A3P25940 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC17.92■□□□□ 0.46
COL5A3P25940 AL512310.5-201ENST00000551999 515 ntBASIC17.92■□□□□ 0.46
COL5A3P25940 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
COL5A3P25940 AL591424.3-201ENST00000614278 872 ntBASIC17.92■□□□□ 0.46
COL5A3P25940 AC090510.3-201ENST00000615831 821 ntBASIC17.92■□□□□ 0.46
COL5A3P25940 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC17.92■□□□□ 0.46
COL5A3P25940 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC17.91■□□□□ 0.46
COL5A3P25940 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.91■□□□□ 0.46
COL5A3P25940 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A3P25940 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A3P25940 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A3P25940 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A3P25940 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
COL5A3P25940 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.91■□□□□ 0.46
COL5A3P25940 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.91■□□□□ 0.46
COL5A3P25940 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A3P25940 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A3P25940 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A3P25940 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A3P25940 SNORA57-201ENST00000383870 149 ntBASIC17.91■□□□□ 0.46
COL5A3P25940 AP000244.1-201ENST00000424582 201 ntBASIC17.91■□□□□ 0.46
COL5A3P25940 IFNWP2-201ENST00000431203 580 ntBASIC17.91■□□□□ 0.46
COL5A3P25940 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC17.91■□□□□ 0.46
COL5A3P25940 RN7SL351P-201ENST00000469306 248 ntBASIC17.91■□□□□ 0.46
COL5A3P25940 SEPHS2P1-201ENST00000511618 1162 ntBASIC17.91■□□□□ 0.46
COL5A3P25940 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC17.91■□□□□ 0.46
COL5A3P25940 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC17.91■□□□□ 0.46
COL5A3P25940 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A3P25940 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
COL5A3P25940 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC17.91■□□□□ 0.46
COL5A3P25940 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC17.91■□□□□ 0.46
COL5A3P25940 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A3P25940 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.91■□□□□ 0.46
COL5A3P25940 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A3P25940 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC17.91■□□□□ 0.46
COL5A3P25940 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A3P25940 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
COL5A3P25940 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A3P25940 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
COL5A3P25940 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.9■□□□□ 0.46
COL5A3P25940 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC17.9■□□□□ 0.46
COL5A3P25940 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 AL139158.3-201ENST00000641212 1562 ntBASIC17.9■□□□□ 0.46
COL5A3P25940 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
COL5A3P25940 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC17.9■□□□□ 0.46
COL5A3P25940 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC17.9■□□□□ 0.46
COL5A3P25940 AL080243.1-201ENST00000423293 1060 ntBASIC17.9■□□□□ 0.46
COL5A3P25940 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC17.9■□□□□ 0.46
COL5A3P25940 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC17.9■□□□□ 0.46
COL5A3P25940 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
COL5A3P25940 NAV1-210ENST00000593583 726 ntBASIC17.9■□□□□ 0.46
COL5A3P25940 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC17.9■□□□□ 0.46
COL5A3P25940 AC148477.9-201ENST00000623974 539 ntBASIC17.9■□□□□ 0.46
COL5A3P25940 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC17.9■□□□□ 0.46
COL5A3P25940 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 AC068760.1-201ENST00000493579 1953 ntBASIC17.9■□□□□ 0.46
COL5A3P25940 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A3P25940 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms