Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
COL3A1P02461 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
COL3A1P02461 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC19.05■□□□□ 0.64
COL3A1P02461 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL3A1P02461 PPP1R2P4-201ENST00000424051 595 ntBASIC19.05■□□□□ 0.64
COL3A1P02461 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC19.05■□□□□ 0.64
COL3A1P02461 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL3A1P02461 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
COL3A1P02461 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC19.05■□□□□ 0.64
COL3A1P02461 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC19.05■□□□□ 0.64
COL3A1P02461 AC009560.1-201ENST00000620208 434 ntBASIC19.05■□□□□ 0.64
COL3A1P02461 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL3A1P02461 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
COL3A1P02461 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL3A1P02461 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
COL3A1P02461 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL3A1P02461 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.05■□□□□ 0.64
COL3A1P02461 KRT18P9-201ENST00000604826 1300 ntBASIC19.05■□□□□ 0.64
COL3A1P02461 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC19.05■□□□□ 0.64
COL3A1P02461 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL3A1P02461 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL3A1P02461 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL3A1P02461 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL3A1P02461 AC007952.5-201ENST00000572818 1486 ntBASIC19.05■□□□□ 0.64
COL3A1P02461 MARK2P16-201ENST00000605714 1723 ntBASIC19.05■□□□□ 0.64
COL3A1P02461 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
COL3A1P02461 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC19.04■□□□□ 0.64
COL3A1P02461 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 AC073869.2-201ENST00000417338 1026 ntBASIC19.04■□□□□ 0.64
COL3A1P02461 ORAOV1P1-201ENST00000503108 395 ntBASIC19.04■□□□□ 0.64
COL3A1P02461 AC008723.1-201ENST00000506922 207 ntBASIC19.04■□□□□ 0.64
COL3A1P02461 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COL3A1P02461 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC19.04■□□□□ 0.64
COL3A1P02461 FOS-204ENST00000554617 796 ntTSL 2 BASIC19.04■□□□□ 0.64
COL3A1P02461 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC19.04■□□□□ 0.64
COL3A1P02461 RN7SL455P-201ENST00000580629 282 ntBASIC19.04■□□□□ 0.64
COL3A1P02461 AC007881.3-201ENST00000608897 607 ntBASIC19.04■□□□□ 0.64
COL3A1P02461 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
COL3A1P02461 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
COL3A1P02461 LINC02228-204ENST00000642115 2962 ntBASIC19.04■□□□□ 0.64
COL3A1P02461 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC19.04■□□□□ 0.64
COL3A1P02461 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC19.04■□□□□ 0.64
COL3A1P02461 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC19.04■□□□□ 0.64
COL3A1P02461 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
COL3A1P02461 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
COL3A1P02461 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC19.04■□□□□ 0.64
COL3A1P02461 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC19.04■□□□□ 0.64
COL3A1P02461 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC19.04■□□□□ 0.64
COL3A1P02461 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL3A1P02461 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL3A1P02461 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL3A1P02461 AC103592.1-201ENST00000394513 664 ntBASIC19.03■□□□□ 0.64
COL3A1P02461 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC19.03■□□□□ 0.64
COL3A1P02461 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC19.03■□□□□ 0.64
COL3A1P02461 AC095040.1-201ENST00000513286 675 ntBASIC19.03■□□□□ 0.64
COL3A1P02461 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC19.03■□□□□ 0.64
COL3A1P02461 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC19.03■□□□□ 0.64
COL3A1P02461 AC005632.3-201ENST00000605544 308 ntBASIC19.03■□□□□ 0.64
COL3A1P02461 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC19.03■□□□□ 0.64
COL3A1P02461 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL3A1P02461 AC099063.4-201ENST00000641099 1602 ntBASIC19.03■□□□□ 0.64
COL3A1P02461 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL3A1P02461 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
COL3A1P02461 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 SARS-202ENST00000369923 1882 ntTSL 5 BASIC19.03■□□□□ 0.64
COL3A1P02461 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC19.03■□□□□ 0.64
COL3A1P02461 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC19.03■□□□□ 0.64
COL3A1P02461 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC19.03■□□□□ 0.64
COL3A1P02461 NAA40-205ENST00000539656 577 ntTSL 4 BASIC19.03■□□□□ 0.64
COL3A1P02461 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL3A1P02461 RPL17P45-201ENST00000586289 509 ntBASIC19.03■□□□□ 0.64
COL3A1P02461 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC19.03■□□□□ 0.64
COL3A1P02461 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms