Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 DFFBP1-201ENST00000433250 979 ntBASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 CD81-207ENST00000481687 890 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 RNA5SP421-201ENST00000516864 134 ntBASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 AC009118.2-201ENST00000613275 655 ntBASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 STK40-201ENST00000359297 4837 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
CCDC54Q8NEL0 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 AC010327.5-201ENST00000586923 3061 ntBASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 SLC4A5-206ENST00000423644 6185 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 AC117489.1-201ENST00000625169 3217 ntBASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 KRT8P35-201ENST00000483942 1338 ntBASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 PGGT1BP2-201ENST00000398621 1028 ntBASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 AC087499.6-201ENST00000411576 835 ntBASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 KLF2P2-201ENST00000416807 1039 ntBASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 KRT18P25-201ENST00000508931 1278 ntBASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 AP001582.1-201ENST00000525856 295 ntBASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 AC124283.3-201ENST00000570869 594 ntBASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 SPDYE22P-201ENST00000582158 798 ntBASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 LRRC59-203ENST00000576448 1531 ntBASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms